Jatropha Genome Database

JcCB0001131.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0001131.20 + phase: 2 /partial
         (1717 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02761                                                             60   2e-08

>KJC_c02761 
          Length = 1711

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 99/122 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1079 gaggttcccactggttggaaattctttgggaatcttatggatgctggaaagttgtcaata 1138
            |||||||||||||| ||||| || ||||| ||  | |||||||| |||  ||  ||| | 
Sbjct: 1197 gaggttcccactggctggaagttttttggcaacttgatggatgcaggactgtgttcagtt 1256

                                                                        
Query: 1139 tgtggggaggaaagttttggaactggttctgatcacattcgtgagaaggatggcatatgg 1198
            |||||||| ||||||||||||||||| || || || || |||||||| ||||| || |||
Sbjct: 1257 tgtggggaagaaagttttggaactggctcagaccatatacgtgagaaagatggaatttgg 1316

              
Query: 1199 gc 1200
            ||
Sbjct: 1317 gc 1318



 Score = 58.0 bits (29), Expect = 7e-08
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                        
Query: 902  aacatgatcctggggaaagagttctttgttactccttcagactcagttgccatcattgct 961
            ||||||||||| || |||  ||||||||| |||||||| || || ||||| || ||||||
Sbjct: 1020 aacatgatccttggtaaaaggttctttgtcactccttcggattctgttgcaattattgct 1079

                     
Query: 962  gccaatgca 970
            |||||||||
Sbjct: 1080 gccaatgca 1088