Jatropha Genome Database

JcCB0001101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0001101.10 + phase: 0 /partial
         (843 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02043                                                            204   2e-52

>KJC_c02043 
          Length = 1228

 Score =  204 bits (103), Expect = 2e-52
 Identities = 295/359 (82%)
 Strand = Plus / Minus

                                                                       
Query: 349 atggactggcaagcagcaccagcaagcccaagtgcctatattgtgaagaaaattttgcgt 408
           |||||||||||||  ||||| || ||||| ||| | || | |||||||| ||||||||||
Sbjct: 707 atggactggcaaggtgcaccggcgagccctagttcatacactgtgaagagaattttgcgt 648

                                                                       
Query: 409 ttggatattcctgttgatagctatccaaatttcaactttgtaggccgacttctgggccct 468
           ||||| ||||| || ||||  ||||||||||| || ||||| || |||||| ||||||| 
Sbjct: 647 ttggaaattccagtagatacttatccaaattttaattttgttgggcgacttttgggcccc 588

                                                                       
Query: 469 aggggcaattccttgaaacgagtagaagcttctacaggctgtcgtgtctatatcagagga 528
           || |||||||| |||||||| || |||||| | |||||||| ||||| || || ||||| 
Sbjct: 587 agaggcaattcattgaaacgggtggaagctaccacaggctgccgtgtatacattagaggg 528

                                                                       
Query: 529 aaaggttcaataaaagacccagaaaaggaagaatcattaaggggaagaccaggatatgag 588
           ||||| |||||||| |||||||| ||||||||     | |||||||||||||| ||||||
Sbjct: 527 aaaggatcaataaaggacccagacaaggaagagaagcttaggggaagaccaggttatgag 468

                                                                       
Query: 589 catctgagtgatccactgcacatcttaattgagggtgaactacctgtcaatattattgac 648
           || |||| ||| ||||| |||||| ||||||| | |||  |||| |  |||||| |||| 
Sbjct: 467 cacctgaatgacccacttcacatcctaattgaagctgatttacccgctaatattgttgat 408

                                                                      
Query: 649 atgcagttgagacaagcacaggagatcattgaagaacttcttaaacctgtggatgagtc 707
           |||  | ||||||| |||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 407 atgaggctgagacaggcacaggaaattatagaagaactgcttaaacctgtggatgagtc 349