Jatropha Genome Database
- JcCA0317991.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0317991.30 - phase: 0 /pseudo
(2396 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c11352 1917 0.0
KJC_c07428 975 0.0
KJC_c04176 341 5e-93
KJC_c03892 74 2e-12
>KJC_c11352
Length = 1060
Score = 1917 bits (967), Expect = 0.0
Identities = 995/999 (99%), Gaps = 4/999 (0%)
Strand = Plus / Plus
Query: 1 atggttgcttgtttccgatatgcttcaatagatgtccattcagtttatcttccaccatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atggttgcttgtttccgatatgcttcaatagatgtccattcagtttatcttccaccatca 124
Query: 61 aaacttgaatttaactatgataatcaggagtggattcaaaaagaagtaaatgaggtacgt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aa-cttgaatttaactatgataatcaggagtggattcaaaaagaagtaaatgaggtacgt 183
Query: 121 caaagggcagacctcttattcaaggaagtgcaaaattctcttcatcgtatttcagagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 caaagggcagacctcttattcaaggaagtgcaaaattctcttcatcgtatttcagagaaa 243
Query: 181 gcatcaagtgtgggatcacagaatggtgacttgaaagcatctgaattagcaacatttcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcatcaagtgtgggatcacagaatggtgacttgaaagcatctgaattagcaacatttcgt 303
Query: 241 gttgttgaacttgaagggatactgcagaagaataaggaagaatttgaggaatcctttcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttgttgaacttgaagggatactgcagaagaataaggaagaatttgaggaatcctttcgg 363
Query: 301 aatatgccatctaaggaagtgaaagttggccgacctgtgattgatattcttgaaatcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatatgccatctaaggaagtgaaagttggccgacctgtgattgatattcttgaaatcaat 423
Query: 361 aaactacggaggcagatactcttcaattgtattgcttggaacgaaacgctgaaagatgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaactacggaggcagatactcttcaattgtattgcttggaacgaaacgctgaaagatgca 483
Query: 421 gaccgtttaagcactacaattctccatgaaggtcagaggagcttcattccaaaactcaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaccgtttaagcactacaattctccatgaaggtcagaggagcttcattccaaaactcaag 543
Query: 481 gagaaatttgtcaattctgttgagaaccttgttgagatagatctctctcctaagcttggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gagaaatttgtcaattctgttgagaaccttgttgagatagatctctctcctaagcttggt 603
Query: 541 aaaagttttagcagttgtgattcagttccagtggatacaaagccagtggtaaatcttaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaaagttttagcagttgtgattcagttccagtggatacaaagccagtggtaaatcttaat 663
Query: 601 cagggaggaaatgatagctatatacaccaaccagtcagagtacatgaaggaagaggcatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cagggaggaaatgatagctatatacaccaaccagtcagagtacatgaaggaagaggcatg 723
Query: 661 gatctggacctgaatctgaggaaggaggctgcacgttctctttcttctagtgaaaatatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gatctggacctgaatctgaggaaggaggctgcacgttctctttcttctagtgaaaatatc 783
Query: 721 aatgagaaatctgacccttctgaatctggaaatgctgtgcgaagagtccattcagagggg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aatgagaaatctgacccttctgaatctggaaatgctgtgcgaagagtccattcagagggg 843
Query: 781 gagtttccaattatggataacttatctgacactcttgatgcagcatggattggtaaaaat 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 844 gagtttccaattatggataacttatctgacactcttgatgcagcatggattggt-aaaat 902
Query: 841 caacctggaagcatgacacttaaagataatggttcctcccttcctgatccagctgcagta 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 caacctggaagcatgacacttaaagataatggttcctcccttcctgatccagctgcagta 962
Query: 901 aattcggttgctgcaaatacagacttgg-aaattatactattgaaaaaggtaggagcgag 959
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 963 aattcggttgctgcaaatacagacttggaaaattatactattg-aaaaggtaggagcgag 1021
Query: 960 gaatttcattctcttgattctgcattaggtacaaagggg 998
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 gaatttcattctcttgattctgcattaggtacaaagggg 1060
>KJC_c07428
Length = 506
Score = 975 bits (492), Expect = 0.0
Identities = 506/508 (99%), Gaps = 2/508 (0%)
Strand = Plus / Plus
Query: 1485 gttgagtttacagatgaagatcttcaaggacaagttaagtatttggtgacttgttattat 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgagtttacagatgaagatcttcaaggacaagttaagtatttggtgacttgttattat 60
Query: 1545 gcaaagcggtttgaggccttaaggaggatgtgtggcgcttccgagttagattttatacga 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaaagcggtttgaggccttaaggaggatgtgtggcgcttccgagttagattttatacga 120
Query: 1605 tctctgagtcgctgtaagaagtggggagcccagggtggcaagagcaatgttttctttgct 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctctgagtcgctgtaagaagtggggagcccagggtggcaagagcaatgttttctttgct 180
Query: 1665 aagaccttggatgatcgatttatcatcaaacaggttacaaaaacagagctggaatcattc 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaccttggatgatcgatttatcatcaaacaggttacaaaaacagagctggaatcattc 240
Query: 1725 attaaatttggaccagcatacttcaagtacttatctgagtcaatcagtacaggcagtcct 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaaatttggaccagcatacttcaagtacttatctgagtcaatcagtacaggcagtcct 300
Query: 1785 acttgcctggcaaagatactcggtatttatcaggtatcaacaaagcacctcaaaggaggg 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acttgcctggcaaagatactcggtatttatcaggtatcaacaaagcacctcaaaggaggg 360
Query: 1845 aaagaattgaaaatggatgttttggtaatggagaatctcctgtttaagcgaaatgtcgta 1904
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 361 aaagaattgaaaatggatgttttgg-aatggagaatctcctgtttaagcgaaatgtcgta 419
Query: 1905 cggctttatgaccttaaaggatcttcccgctcacgatataacccagatacaagcgggagc 1964
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 420 cggctttatgaccttaaaggatcttcccgctcacgatataacccagatacaagc-ggagc 478
Query: 1965 aataaagttttgctggatcagaatttaa 1992
||||||||||||||||||||||||||||
Sbjct: 479 aataaagttttgctggatcagaatttaa 506
>KJC_c04176
Length = 678
Score = 341 bits (172), Expect = 5e-93
Identities = 539/660 (81%), Gaps = 1/660 (0%)
Strand = Plus / Minus
Query: 1673 ggatgatcgatttatcatcaaacaggttacaaaaacagagctggaatcattcattaaatt 1732
||||||||| ||||| |||||||| || ||||| ||||| |||| ||||| || |||||
Sbjct: 678 ggatgatcggtttattatcaaacaagtcacaaagacagaattggagtcatttataaaatt 619
Query: 1733 tggaccagcatacttcaagtacttatctgagtcaatcagtacaggcagtcctacttgcct 1792
|| || | ||| |||||||| | ||||| ||||| || || | ||||| || |||||
Sbjct: 618 tgctcctgaatatttcaagtatctctctgaatcaattagctcaagaagtccaacatgcct 559
Query: 1793 ggcaaagatactcggtatttatcaggtatcaacaaagcacctcaaaggagggaaagaatt 1852
||||||||| | || ||||||||||| | ||||||| || |||| ||||||||||
Sbjct: 558 ggcaaagattttggggatttatcaggttacgtcaaagcatctgaaagt-gggaaagaatc 500
Query: 1853 gaaaatggatgttttggtaatggagaatctcctgtttaagcgaaatgtcgtacggcttta 1912
|||||||||||| |||| |||||||| || ||||| | |||| || || |||||
Sbjct: 499 aaaaatggatgttctggttatggagaaccttttgtttgggagaaacgtgactcgccttta 440
Query: 1913 tgaccttaaaggatcttcccgctcacgatataacccagatacaagcgggagcaataaagt 1972
||| ||||||||||||||||| ||||| ||||| || ||| | || || |||||||||||
Sbjct: 439 tgatcttaaaggatcttcccggtcacggtataatcctgattccagtggcagcaataaagt 380
Query: 1973 tttgctggatcagaatttaattgaagcaatgccaacttctccaatatttgtgggcaacaa 2032
| || | |||||||| || |||||||| |||||||||||||| || ||||| || |||||
Sbjct: 379 tctgttagatcagaacttgattgaagcgatgccaacttctcctatttttgttggaaacaa 320
Query: 2033 ggcaaagcgattgctagagagggctgtctggaatgatacttcatttcttgcttcgattga 2092
||||||| ||||||| ||||| |||||||||||||||||||| |||||||| || |||||
Sbjct: 319 ggcaaagagattgctggagagagctgtctggaatgatacttcttttcttgcatcaattga 260
Query: 2093 tgtaatggactactcattattggttggtgtggatgaggaaaagcatcaactggtactggg 2152
||||||||||||||| ||||||||||| |||||||| || |||||| || | || || ||
Sbjct: 259 tgtaatggactactctttattggttggggtggatgaagagaagcatgaattagttcttgg 200
Query: 2153 aatcattgattttatgagacagtatacgtgggacaagcaccttgagacctgggtgaaggc 2212
|||||||||||| ||||| || ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 199 aatcattgatttcatgaggcaatatacatgggacaagcacctggagacatgggtgaaggc 140
Query: 2213 ctcaggcatccttggtgggtctaagaacacttctccaactgttatctcaccccagcagta 2272
||||| || ||||| || | ||||| | |||||||||||||| || || |||| ||
Sbjct: 139 ttcaggtatacttgggggaccaaagaatgcatctccaactgttatttctcctaagcaata 80
Query: 2273 taagaaacgtttcagaaaggctatgaccgcgtattttctcatggtgccagatcagtggtc 2332
|||||| | ||||| || || ||||| | |||||||| ||||| |||||||| |||||
Sbjct: 79 caagaaaaggttcaggaaagcaatgactacatattttctaatggtcccagatcaatggtc 20
>KJC_c03892
Length = 440
Score = 73.8 bits (37), Expect = 2e-12
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 1533 acttgttattatgcaaagcggtttgaggccttaaggaggatgtgtggcgcttccgagtta 1592
|||||||||| ||| ||||||||||| |||||||||||||| ||| || | |||||| |
Sbjct: 97 acttgttattttgcgaagcggtttgaagccttaaggaggatatgttgcccatccgagctt 38
Query: 1593 gattttatacgatctctgagtcgctgtaagaagtggg 1629
||||||||| | ||||| ||||| |||| |||||||
Sbjct: 37 gattttataaggtctctcagtcgttgtagaaagtggg 1