Jatropha Genome Database

JcCA0317741.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317741.40 - phase: 0 /partial
         (195 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09092                                                             52   5e-07

>KJC_c09092 
          Length = 775

 Score = 52.0 bits (26), Expect = 5e-07
 Identities = 134/170 (78%)
 Strand = Plus / Plus

                                                                       
Query: 7   gttcaatcagatcctgctggacgcttggttataacaggtcaaccagagcagcttgacaat 66
           |||||||||||||| || ||||| || ||||| |  ||| |||| ||| | |  || |||
Sbjct: 324 gttcaatcagatccagcaggacgattagttattagtggtgaacctgagtatcccgataat 383

                                                                       
Query: 67  ccttggggcataacgccctttaagaaggttgtaagcttaccttcaagaattgacccgctt 126
           ||||||||  | || ||||| |  |||||||| |||||||| ||||| || ||||||| |
Sbjct: 384 ccttggggtgtcacacccttcagaaaggttgtgagcttaccctcaaggatcgacccgcat 443

                                                             
Query: 127 cagacatctgctgttgttagccttcatggccgactatatgttcgcgtccc 176
           ||||| || ||||| || | ||||||||| | ||| | |||||| |||||
Sbjct: 444 cagacttcagctgtagtcacccttcatggacaactgtttgttcgagtccc 493