Jatropha Genome Database

JcCA0317741.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317741.30 + phase: 0 /pseudo
         (868 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10304                                                             60   9e-09

>KJC_c10304 
          Length = 682

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 67/78 (85%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                       
Query: 200 gaggccgtcctcctggctccaagaacaaacctaagcctccgattatt-gtaacacgagat 258
           |||| ||||||||||| ||||| |||||||| || ||||| ||| || ||||| ||||| 
Sbjct: 141 gaggtcgtcctcctggatccaaaaacaaacccaaacctccaatttttcgtaacccgagac 200

                             
Query: 259 agccccaatgctctccga 276
           ||||| ||||||||||||
Sbjct: 201 agccctaatgctctccga 218