Jatropha Genome Database

JcCA0317631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317631.20 + phase: 0 /pseudo/partial
         (306 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10956                                                            313   1e-85

>KJC_c10956 
          Length = 496

 Score =  313 bits (158), Expect = 1e-85
 Identities = 171/174 (98%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttatcgcagccagggatggagatattcccatcgtaccattgagcactcatgacagtc 60
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 179 ttctcatcgcagccagggatggagatat-cccatcgtaccattgagcactcatgacagtc 121

                                                                       
Query: 61  tcaatactatcagcaatcaaatctctactctgcaagctaaaacacatccccctagttccc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 120 tcaatactatcagcaatcaaatctctactctgcaagctaaaacacacccccctagttccc 61

                                                                 
Query: 121 atggaaatagcatcacttacgccaatagtgttaaacctgaacccaaccatccct 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  atggaaatagcatcacttacgccaatagtgttaaacctgaacccaaccatccct 7