Jatropha Genome Database
- JcCA0317291.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0317291.20 + phase: 0 /partial
(2481 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c11977 74 2e-12
KJC_c09708 74 2e-12
KJC_s16951 60 3e-08
KJC_s16852 60 3e-08
KJC_c00298 60 3e-08
KJC_c00106 52 7e-06
>KJC_c11977
Length = 696
Score = 73.8 bits (37), Expect = 2e-12
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 228 tcttcgaattggaccttatgtttgtgctgaatggaattatggagggtttcctgtgtggtt 287
|||||| |||||||||||||| ||||| || ||||||| ||||||||||||||| |||||
Sbjct: 299 tcttcgcattggaccttatgtatgtgcagagtggaattttggagggtttcctgtttggtt 240
Query: 288 g 288
|
Sbjct: 239 g 239
>KJC_c09708
Length = 539
Score = 73.8 bits (37), Expect = 2e-12
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 228 tcttcgaattggaccttatgtttgtgctgaatggaattatggagggtttcctgtgtggtt 287
|||||| |||||||||||||||||||| || ||||||| |||||| |||||||| |||||
Sbjct: 362 tcttcgcattggaccttatgtttgtgcagagtggaattttggaggttttcctgtctggtt 421
Query: 288 g 288
|
Sbjct: 422 g 422
>KJC_s16951
Length = 477
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 631 ccaaaaatgtggactgaaaattggactggttggt 664
|||||||||||||| |||||||||||||||||||
Sbjct: 132 ccaaaaatgtggacagaaaattggactggttggt 165
>KJC_s16852
Length = 372
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 232 cgaattggaccttatgtttgtgctgaatggaatt 265
||||| ||||||||||||||||||||||||||||
Sbjct: 15 cgaatcggaccttatgtttgtgctgaatggaatt 48
>KJC_c00298
Length = 2804
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 631 ccaaaaatgtggactgaaaattggactggttggt 664
|||||||||||||| |||||||||||||||||||
Sbjct: 2001 ccaaaaatgtggacagaaaattggactggttggt 1968
Score = 60.0 bits (30), Expect = 3e-08
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 232 cgaattggaccttatgtttgtgctgaatggaatt 265
||||| ||||||||||||||||||||||||||||
Sbjct: 2400 cgaatcggaccttatgtttgtgctgaatggaatt 2367
Score = 52.0 bits (26), Expect = 7e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 829 gattatgatgcacctcttgatgaatatgga 858
||||||||||| ||||||||||||||||||
Sbjct: 1806 gattatgatgcccctcttgatgaatatgga 1777
>KJC_c00106
Length = 2163
Score = 52.0 bits (26), Expect = 7e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 825 ctatgattatgatgcacctcttgatgaatatgga 858
||||||||||||||| ||| ||||||||||||||
Sbjct: 884 ctatgattatgatgctcctattgatgaatatgga 851