Jatropha Genome Database

JcCA0317081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317081.10 - phase: 0 
         (681 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05178                                                            938   0.0  

>KJC_c05178 
          Length = 667

 Score =  938 bits (473), Expect = 0.0
 Identities = 496/501 (99%), Gaps = 2/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 181 gcaaggtgcatgacaaaggcacgacgacttggggtttctactcctgtgctgtatgctctg 240
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 667 gcaaggtgcatg-caaaggcacgacgacttggggtttcta-tcctgtgctgtatgctctg 610

                                                                       
Query: 241 gatcctttgctgcatacgctcacatttgagtatgtggacggtcattctgtgaaagatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gatcctttgctgcatacgctcacatttgagtatgtggacggtcattctgtgaaagatatc 550

                                                                       
Query: 301 tttcttgagtttgggttacatggtgttgtggaagaacgtttggctgatattgcaatgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttcttgagtttgggttacatggtgttgtggaagaacgtttggctgatattgcaatgcag 490

                                                                       
Query: 361 atcggcgatgcaattggaaaactacatgatggtggcctcattcatggtgacttgaccact 420
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 489 atcggcgatgcaattggaaactaacatgatggtggcctcattcatggtgacttgaccact 430

                                                                       
Query: 421 tccaacatgctaatccgcaatggcactaatcaactggtgctcattgattttggtctgagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tccaacatgctaatccgcaatggcactaatcaactggtgctcattgattttggtctgagc 370

                                                                       
Query: 481 ttcacatcaacccttcccgaagacaaggcagttgatttgtatgtacttgaaagagccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttcacatcaacccttcccgaagacaaggcagttgatttgtatgtacttgaaagagccttg 310

                                                                       
Query: 541 ctttctatgcattcttcatgtggcaatgtgatggatcgcataattgctgcatataagaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctttctatgcattcttcatgtggcaatgtgatggatcgcataattgctgcatataagaaa 250

                                                                       
Query: 601 tcttcaaaacagtggtcatccaccatgaacaagctagcccaagttcgccaaaggggccga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcttcaaaacagtggtcatccaccatgaacaagctagcccaagttcgccaaaggggccga 190

                                
Query: 661 aagcgcaccatggttggatga 681
           |||||||||||||||||||||
Sbjct: 189 aagcgcaccatggttggatga 169