Jatropha Genome Database

JcCA0316521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0316521.10 + phase: 0 /pseudo/partial
         (621 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06120                                                            287   2e-77

>KJC_c06120 
          Length = 599

 Score =  287 bits (145), Expect = 2e-77
 Identities = 319/373 (85%), Gaps = 3/373 (0%)
 Strand = Plus / Minus

                                                                       
Query: 242 gcctctcaatctaatgtcattttttccaccgtcggctttcctttcc-acatccgtcaagt 300
           |||||||||||| ||||| |||| || | |||||||||||| | || || ||||||||||
Sbjct: 569 gcctctcaatctgatgtcgttttctctatcgtcggctttccctcccgacgtccgtcaagt 510

                                                                       
Query: 301 cctactggattccaccattggagctctccaaagtcttcgcattggtggaattcttgttg- 359
           ||| ||||||||||||| ||||||||||||| | || |||   |||||||| || |||| 
Sbjct: 509 cctcctggattccaccactggagctctccaaggcctccgcccgggtggaatcctcgttga 450

                                                                       
Query: 360 catgaccacattcgatcccttcctcgcctcagagatttctgatgtggcatttgccaaaaa 419
           ||||||||||| |||||||| ||||||||| ||||| || |  | |||||  ||| ||||
Sbjct: 449 catgaccacatccgatccctccctcgcctccgagatctccgcagcggcatccgcc-aaaa 391

                                                                       
Query: 420 ttaccactccattgatgctccagtttctagaggtgaccgtggtgataagaacaaaaccca 479
           || |||||| |||||||||||||| ||  |||||||||| |||| ||||||   ||||| 
Sbjct: 390 ttgccactctattgatgctccagtctccggaggtgaccgcggtgctaagaatggaaccct 331

                                                                       
Query: 480 tgcaatatttgcaggaggggataaagtagtcattgatcgcttgaatcccctgtttgttct 539
           ||||||||| || ||||||||| ||| ||| || |||||||||||||||||||||| |||
Sbjct: 330 tgcaatattcgctggaggggatgaagcagttatcgatcgcttgaatcccctgtttgctct 271

                                                                       
Query: 540 catgggaaaggttaattacatgggtgctcctggcaaaggccaattggcgaagctaacaaa 599
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||  ||||
Sbjct: 270 catgggaaagcttaattacatgggtgctcctggcaaaggccaatttgcgaagctggcaaa 211

                        
Query: 600 tcaaattgccata 612
           ||||||| |||||
Sbjct: 210 tcaaattaccata 198