Jatropha Genome Database

JcCA0316161.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0316161.30 + phase: 0 
         (807 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06473                                                            886   0.0  

>KJC_c06473 
          Length = 514

 Score =  886 bits (447), Expect = 0.0
 Identities = 499/515 (96%), Gaps = 1/515 (0%)
 Strand = Plus / Plus

                                                                       
Query: 77  accgagacaaactatccgtcgtctatggcgatgtcaagtatacctggagagagacttacc 136
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   accgagacaatctatccgtcgtctatggcgatgtcaagtatacctggaaagagacttacc 60

                                                                       
Query: 137 agaggtgcatcaagctcgcttctgctctcgcccaccacgggatttcccgtggcgatgtgg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agaggtgcatcaagctcgcttctgctctcgcccaccacgggatttcccgtggcgatgtgg 120

                                                                       
Query: 197 ttgctgcattggctccaaatattccagcattatttgaactgcactttggcgttccaatgg 256
           |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 121 ttgctgtattggctccaaatattccagcattatatgaactacactttggcgttccaatgg 180

                                                                       
Query: 257 ctggggcagttctttgtacactaaatatacgccatgattcagcaatggtgtctgtgttac 316
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 -tggggcagttctgtgtacactaaatatacgccatgattcagcaatggtgtctgtgttac 239

                                                                       
Query: 317 tgagacattcagaggccaaagccatttttgtggactaccaatttctgccaattgctcagg 376
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 240 tgagacattcagaggccaaagccatttttgtggattaccaatttctgccaattgcccagg 299

                                                                       
Query: 377 gagctctggaacttctaaccaagacgggatccaagctgcccttcattgtcttgatccagg 436
           |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||
Sbjct: 300 gagctctggaacttctaaccaagacgggatccaagctgccctttcttgtcttgatcgagg 359

                                                                       
Query: 437 actgtaatcaaccagctcctatctcctctaaagggaacttagagtatgagagtcttctag 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 actgtaatcaaccagctcctatctcctctaaagggaacttagagtatgagagtcttctag 419

                                                                       
Query: 497 caatgggaaaactggattttgagataatacgaccaaatgttgaatgggatcctatttcac 556
           ||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||
Sbjct: 420 caatgggaaaactggattttgaagtaatacaaccaaatgatgaatgggatcctatttcac 479

                                              
Query: 557 ttaattatacctcgggaaccacatcgagtccaaaa 591
           |||||||||||||||||||||||||||||||||||
Sbjct: 480 ttaattatacctcgggaaccacatcgagtccaaaa 514