Jatropha Genome Database

JcCA0315811.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0315811.20 + phase: 0 /pseudo
         (2216 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12172                                                             54   1e-06

>KJC_c12172 
          Length = 860

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 111/139 (79%)
 Strand = Plus / Minus

                                                                        
Query: 929  ttggtttaggaagtagaatcattataacaagtagagataagcaagtgcttatgaataaag 988
            ||||||| ||||||||| | ||| | |||  |||||||| ||| || |||| ||||| ||
Sbjct: 231  ttggtttgggaagtagagttattgtgacatctagagataggcaggttcttaagaatatag 172

                                                                        
Query: 989  ctgataaaatatatgaggttaagggattgaatcactatgaagctcttcaattacttagtt 1048
             |||| |  ||||||| ||| ||||||| ||| |  ||||||||||||||||  | ||||
Sbjct: 171  ttgatgatgtatatgaagttgagggattaaatgatgatgaagctcttcaattgttcagtt 112

                               
Query: 1049 tgaaggcttttaagcaaaa 1067
            || | ||||||||| ||||
Sbjct: 111  tgtatgcttttaagaaaaa 93