Jatropha Genome Database

JcCA0315811.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0315811.10 + phase: 0 
         (1875 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11858                                                            355   2e-97

>KJC_c11858 
          Length = 227

 Score =  355 bits (179), Expect = 2e-97
 Identities = 217/227 (95%), Gaps = 2/227 (0%)
 Strand = Plus / Plus

                                                                        
Query: 987  aagcagagatagacaa-ttgcttaagaactttggtgccacaatatatgaagttgagaaat 1045
            |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1    aagcagagatagacaaattgcttaagaactgtggtgccacaatatatgaagttgagaaat 60

                                                                        
Query: 1046 taaataaaagtgaagctctctgcctgttttgcaagcatgccttcaagcaacaatttccaa 1105
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  
Sbjct: 61   taaataaaagtgaagctctctgcctgtttttcaagcatgccttcaagcaacaatttcc-t 119

                                                                        
Query: 1106 gaacaggatattttgagttgtccaatatggcaattgatcatgctcagggcattccattgg 1165
            |  | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 120  gttctggatattttgagttgtccaatatggcaattgatcatgctcagggcattccgttgg 179

                                                           
Query: 1166 ctctcaaagttttaggttccaatttgtatggcaagagtgaagaagta 1212
            || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  ctatcaaagttttaggttccaatttgtatggcaagagtgaagaagta 226