Jatropha Genome Database

JcCA0315581.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0315581.20 - phase: 0 
         (813 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01885                                                           1011   0.0  

>KJC_c01885 
          Length = 765

 Score = 1011 bits (510), Expect = 0.0
 Identities = 517/518 (99%), Gaps = 1/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 296 ctgaagacttcttggctcgacttaaatcccttcaactggcttcagccaacataagtggca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ctgaagacttcttggctcgacttaaatcccttcaactggcttcagccaacataagtggca 706

                                                                       
Query: 356 ttgaattccctttcaaggaggctacaggagatgatatgcattctgctgaaatgctaatta 415
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttgaat-ccctttcaaggaggctacaggagatgatatgcattctgctgaaatgctaatta 647

                                                                       
Query: 416 atgtttctaacgaggaacctagttggtgggtttgggtcacagaagaaatggctcccaaca 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgtttctaacgaggaacctagttggtgggtttgggtcacagaagaaatggctcccaaca 587

                                                                       
Query: 476 atattgaagaacggagtagaattgacaatgaaaactatgtagttgttactgaggaacatg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atattgaagaacggagtagaattgacaatgaaaactatgtagttgttactgaggaacatg 527

                                                                       
Query: 536 tggtggatgcagttgccaattttatggctaaatgcattctatcaaatcctaaggctcaga 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tggtggatgcagttgccaattttatggctaaatgcattctatcaaatcctaaggctcaga 467

                                                                       
Query: 596 aaatgactccagaggagctgcagaagtccctggaaaaagcattggaaggtgtgagcaaat 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaatgactccagaggagctgcagaagtccctggaaaaagcattggaaggtgtgagcaaat 407

                                                                       
Query: 656 gggagaagatattaaatatttggcatgcaggacagctattttacactctggctacctggg 715
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gggagaagatattaaatatttggcatgcaggacagctattttacactctggctacctggg 347

                                                                       
Query: 716 gacttgccctgtgggggctgtatcggactcgatctattctgaaacttgctgcaaagggcg 775
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gacttgccctgtgggggctgtatcggactcgatctattctgaaacttgctgcaaagggcg 287

                                                 
Query: 776 ttcacaaaaccagcaaagtcgttctaaaggcactttga 813
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttcacaaaaccagcaaagtcgttctaaaggcactttga 249