Jatropha Genome Database

JcCA0315091.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0315091.30 + phase: 0 /partial
         (564 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09585                                                            870   0.0  

>KJC_c09585 
          Length = 555

 Score =  870 bits (439), Expect = 0.0
 Identities = 486/495 (98%), Gaps = 5/495 (1%)
 Strand = Plus / Minus

                                                                       
Query: 74  ttcagactcgtgaggt-gttggaaggaaaaccacccacatgtaatatctttaagcagcag 132
           |||||||||||||||| ||||| | | |||| ||||||||||||||||||||||||||||
Sbjct: 555 ttcagactcgtgaggtagttggtaaggaaacaacccacatgtaatatctttaagcagcag 496

                                                                       
Query: 133 tat-gcttttaatttattttc-acacaatgcacccgtccttgaaaatgggtacaatgaag 190
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatagcttttaatttattttctacacaatgcacccgtccttgaaaatgggtacaatgaag 436

                                                                       
Query: 191 aggaaatgaaattagtaaaggaaacccgaaaaatttggaatgacatgaatgttaaagtca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aggaaatgaaattagtaaaggaaacccgaaaaatttggaatgacatgaatgttaaagtca 376

                                                                       
Query: 251 ctgccacatgtatacgagttcctgtcatgcgtgcacatgctgaaagtgttaatcttcaat 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgccacatgtatacgagttcctgtcatgcgtgcacatgctgaaagtgttaatcttcaat 316

                                                                       
Query: 311 ttgagaagccccttgatgaggacacagcaagggccattctgaagaatgctgctggcgtgg 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttgagaagccccttgatgaggacacagcaagggccattctgaagaatgctgctggcgtgg 256

                                                                       
Query: 371 tggttattgatgatcgggcatccaatcacttcccaacgccattggaggtatcaaacaaag 430
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggtta-tgatgatcgggcatccaatcacttcccaacgccattggaggtatcaaacaaag 197

                                                                       
Query: 431 atgatgttgcagtcggtagaatccgccgtgatgtttctcaagaggggaatcat-gggttg 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 196 atgatgttgcagtcggtagaatccgccgtgatgtttctcaagaggggaatcatggggttg 137

                                                                       
Query: 490 gatatatttgtttgtggggatcagatacgcaagggcgctgcacttaatgccattcagatt 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gatatatttgtttgtggggatcagatacgcaagggcgctgcacttaatgccattcagatt 77

                          
Query: 550 gctgagttgctgcta 564
           |||||||||||||||
Sbjct: 76  gctgagttgctgcta 62