Jatropha Genome Database

JcCA0314441.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0314441.10 - phase: 0 /partial
         (439 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12379                                                             62   1e-09
KJC_c02779                                                             54   3e-07

>KJC_c12379 
          Length = 819

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 214 tcagactcttttgctatcttgctgtatttggatgagaagtatcctca 260
           |||||||||||||| || |||||||||||||| || |||||||||||
Sbjct: 288 tcagactcttttgcaatattgctgtatttggaagaaaagtatcctca 334


>KJC_c02779 
          Length = 856

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 43/47 (91%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                          
Query: 214 tcagactcttttgctatcttgctgtatttggatgagaagtatcctca 260
           |||||||||||||| || |||||||||||||| || |||||||||||
Sbjct: 230 tcagactcttttgcaatattgctgtatttggaaga-aagtatcctca 275