Jatropha Genome Database

JcCA0314181.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0314181.20 - phase: 0 /partial
         (1176 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10956                                                            375   e-103

>KJC_c10956 
          Length = 496

 Score =  375 bits (189), Expect = e-103
 Identities = 196/197 (99%), Gaps = 1/197 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttatggagaatatgtaaatggttctataagtgacgagggcaggaaaaatgtagtccgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 301 gtttatggagaatatgtaaatggttctataagtgacgagggcaggaaaa-tgtagtccgg 359

                                                                       
Query: 61  aactcgtgccctggggctggggcttgtggtggaatgtatacagccaacacaatggcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aactcgtgccctggggctggggcttgtggtggaatgtatacagccaacacaatggcttct 419

                                                                       
Query: 121 gctattgaggccatgggaatgtctcttccttacagctcttcaatacctgctgaaagtcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gctattgaggccatgggaatgtctcttccttacagctcttcaatacctgctgaaagtcca 479

                            
Query: 181 ttgaagttggatgagtg 197
           |||||||||||||||||
Sbjct: 480 ttgaagttggatgagtg 496