Jatropha Genome Database

JcCA0313951.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313951.10 + phase: 0 /partial
         (1194 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07935                                                            258   3e-68
KJC_c09716                                                             82   4e-15

>KJC_c07935 
          Length = 468

 Score =  258 bits (130), Expect = 3e-68
 Identities = 140/142 (98%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1054 gagtggaaggcacaggcaggcaatgaatgcattgcatcttttg-actggagctgcagcgg 1112
            ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 463  gagtggaaggcacaggcaggcaatgtatgcattgcatcttttgtactggagctgcagcgg 404

                                                                        
Query: 1113 aatctgcaaatctgtagagaagatcaaatttgttcatgaaagatgtggtgaaggggatgg 1172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403  aatctgcaaatctgtagagaagatcaaatttgttcatgaaagatgtggtgaaggggatgg 344

                                  
Query: 1173 agctgtatggagtgctctcttt 1194
            ||||||||||||||||||||||
Sbjct: 343  agctgtatggagtgctctcttt 322


>KJC_c09716 
          Length = 530

 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 272/349 (77%)
 Strand = Plus / Minus

                                                                        
Query: 761  aacccagggtgtacattggatgtatgaagtctggaccggttctttctcagaagaatgtca 820
            |||||||||| || || ||||| |||||||| || || || ||| |||| |||   || |
Sbjct: 490  aacccagggtctatataggatgcatgaagtccggtccagtccttgctcaaaagggagtga 431

                                                                        
Query: 821  agtatcatgaaccagagtattggaaatttggagaggaagggaacaaatatttccgacatg 880
            | || |||||||| ||||||||||||||||| || ||||| ||||| |||||||| || |
Sbjct: 430  aataccatgaacctgagtattggaaatttggggaagaaggaaacaagtatttccgtcacg 371

                                                                        
Query: 881  caactggacagatatacgcaatctcaaaggatcttgccacatatatctccatcaaccagc 940
            | || || ||| |||| || || ||||| ||| | ||||| ||| | || || ||||| |
Sbjct: 370  ctacagggcagctatatgctatttcaaatgatttggccacttatgtatcaattaaccaac 311

                                                                        
Query: 941  cgctattgcacaagtatgctaatgaagatgtgtcacttggatcatggtttattggtcttg 1000
               | || ||||||||||||||||| ||||| ||| | || || ||||| |||||  | |
Sbjct: 310  acgtgttacacaagtatgctaatgaggatgtatcattggggtcgtggttcattggattgg 251

                                                                        
Query: 1001 aggtagaacacattgatgaccgcaacatgtgctgtggaactccaccagattgtgagtgga 1060
            | || || || ||||||||||| |   | |||||||| || || || ||||| |||||||
Sbjct: 250  atgtggatcatattgatgaccggagactctgctgtggtacaccgcctgattgcgagtgga 191

                                                             
Query: 1061 aggcacaggcaggcaatgaatgcattgcatcttttgactggagctgcag 1109
            |||| |||||||||||    ||| |||| || ||||| |||||||||||
Sbjct: 190  aggcccaggcaggcaacatctgcgttgcttcatttgattggagctgcag 142