Jatropha Genome Database

JcCA0313731.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313731.10 - phase: 0 /pseudo
         (1993 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04137                                                             88   1e-16
KJC_c03459                                                             66   4e-10

>KJC_c04137 
          Length = 497

 Score = 87.7 bits (44), Expect = 1e-16
 Identities = 89/104 (85%)
 Strand = Plus / Plus

                                                                       
Query: 301 caagaaaatactatgattcaaacttgtgcagtagcatgttatagtatatcagttggaggt 360
           ||||||||||| || ||||| |||||||| || || |||||||| ||  | |||||||||
Sbjct: 286 caagaaaatacaataattcagacttgtgctgttgcttgttatagcattgctgttggaggt 345

                                                       
Query: 361 gggtttgcttcttatcttttgggattaaacaggaagacatatga 404
           || ||||  ||||||||  |||||||||||||||||||||||||
Sbjct: 346 ggttttgggtcttatctactgggattaaacaggaagacatatga 389


>KJC_c03459 
          Length = 494

 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1549 ttctacaaggcatttgatgttggaaatccaaagggagagtttaaagctccttatgcatta 1608
            |||||||| || |||||||| || || ||  | ||||||| ||||||||| |||||  | 
Sbjct: 197  ttctacaaagcttttgatgtggggaaccccgatggagagtataaagctccctatgctatc 256

                                         
Query: 1609 atatacagaaacatggcaattcttggtgt 1637
            || ||||||||||||||||||||||||||
Sbjct: 257  atctacagaaacatggcaattcttggtgt 285