Jatropha Genome Database

JcCA0313541.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313541.20 - phase: 0 /pseudo
         (1409 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03154                                                            143   1e-33

>KJC_c03154 
          Length = 616

 Score =  143 bits (72), Expect = 1e-33
 Identities = 297/372 (79%)
 Strand = Plus / Plus

                                                                       
Query: 209 ttggtgatgaaagtggaataataaatcggattgctggtgtttttgctagaaggggttaca 268
           |||| |||||||||||||| || ||||| ||||| || |||||||| |||||||| || |
Sbjct: 209 ttggcgatgaaagtggaatgattaatcgaattgcaggggtttttgcgagaaggggatata 268

                                                                       
Query: 269 acattgagtcccttgcagttggtttaaataaggacaaggctctctttaccatagttgtcc 328
           | |||||||| ||||| |||||| | || ||||| ||||| || || ||||| |||||| 
Sbjct: 269 atattgagtcgcttgctgttggtctgaacaaggataaggcccttttcaccattgttgtct 328

                                                                       
Query: 329 gtggaactgacaaggttttgcaacaagtaatagagcagcttaacaagcttgtgaatgtca 388
            ||||||||| || ||  | ||||||||  ||||||||||| | || ||||| |||||  
Sbjct: 329 ctggaactgaaaaagtgctacaacaagttgtagagcagcttcagaaacttgtcaatgttt 388

                                                                       
Query: 389 taaaagtggaagatatctctcgagaaccacaagtagaacgggaattgatgcttttaaaac 448
           |||| || |||||| ||||  | || ||||| |||||||||||  |||||||| ||||| 
Sbjct: 389 taaaggttgaagatctctccagtgagccacaggtagaacgggagctgatgcttataaaag 448

                                                                       
Query: 449 tcaatgtggatccaagtacccatcctgagatcatgtgactggtggacatcttcagaacaa 508
           | ||||  ||||| | |   | | ||||||||| |||  |||| || || |||||| |||
Sbjct: 449 tgaatgcagatcctaattatcgtgctgagatcaagtggttggttgaaattttcagagcaa 508

                                                                       
Query: 509 aagttgtcgatatctcagagcataccctgactattgaggtcactggagatcctgggaaga 568
           || |||| ||||||||||||||  |  | || |||||||| ||||||||||| |||||||
Sbjct: 509 aaattgtggatatctcagagcactcagtcacaattgaggtaactggagatccagggaaga 568

                       
Query: 569 tggctgctgttc 580
           ||| ||||||||
Sbjct: 569 tggttgctgttc 580