Jatropha Genome Database

JcCA0313541.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313541.10 + phase: 0 
         (1032 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00773                                                             92   3e-18

>KJC_c00773 
          Length = 1304

 Score = 91.7 bits (46), Expect = 3e-18
 Identities = 208/262 (79%)
 Strand = Plus / Minus

                                                                       
Query: 398 ttcttggtatgcctggttttactgcctatgcaggattttatgaggtctcttctcctaaga 457
           ||||||||||| |||| || || || ||||| || |||||||||||   | |||||||||
Sbjct: 702 ttcttggtatgtctgggttaacagcttatgctggtttttatgaggttggtgctcctaaga 643

                                                                       
Query: 458 aaggagattatgtctttgtgtctgcagcgtcaggagccgtcggtcagcttgttggtcaat 517
           ||||||||||||| || || || ||||| || || || || |||||||||||||| ||||
Sbjct: 642 aaggagattatgtgttcgtttcagcagcttctggtgcagttggtcagcttgttggccaat 583

                                                                       
Query: 518 ttgccaagttacatggctgctatgtagttggaagtgctggcacaagccaaaaggttgatc 577
           | || |||||    || || ||||| |||||||||||||| |  |   |||| |||||| 
Sbjct: 582 tcgcaaagttgtcaggttgttatgtggttggaagtgctggaagcaaagaaaaagttgatt 523

                                                                       
Query: 578 ttttaaagaataagcttggatttgatgaagctttcaactacaaagaagagaccaacctgg 637
           | || ||||| ||| ||||||| || || |||||||| ||||| |||||     || |||
Sbjct: 522 tgttgaagaacaagtttggattcgacgaggctttcaattacaatgaagaacaggacttgg 463

                                 
Query: 638 atgcagctttgaaaaggtattt 659
           |||||||||||||||| |||||
Sbjct: 462 atgcagctttgaaaagatattt 441