Jatropha Genome Database

JcCA0312871.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0312871.20 + phase: 0 
         (573 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01740                                                            444   e-124

>KJC_c01740 
          Length = 654

 Score =  444 bits (224), Expect = e-124
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                       
Query: 335 agaggaggggtcgtgtggatgctgataaggtggctgtcttaaatgcgtggcgtagaatag 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agaggaggggtcgtgtggatgctgataaggtggctgtcttaaatgcgtggcgtagaatag 361

                                                                       
Query: 395 atagccgaacgagagaagcacttcgccgtagctttcttacagatcttattgagggctatg 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atagccgaacgagagaagcacttcgccgtagctttcttacagatcttattgagggctatg 301

                                                                       
Query: 455 aggcatgcataaggaccttcattcaggagagtggagatgaggaagttctcgcattacagg 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aggcatgcataaggaccttcattcaggagagtggagatgaggaagttctcgcattacagg 241

                                                       
Query: 515 ttcaagatccctttcatagattgttgctgcatggagtttgtgag 558
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttcaagatccctttcatagattgttgctgcatggagtttgtgag 197



 Score =  377 bits (190), Expect = e-104
 Identities = 197/198 (99%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                       
Query: 139 ggcaaagtcagcaacagaagatctcggagatggataaacgaccgcttgttgatggaactt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggcaaagtcagcaacagaagatctcggagatggataaacgaccgcttgttgatggaactt 595

                                                                       
Query: 199 gttcctcgcttaaatgcagaagaaattagaggcttgtttgctccaccaccttggggcgat 258
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gttcctcgct-aaatgcagaagaaattagaggcttgtttgctccaccaccttggggcgat 536

                                                                       
Query: 259 gatgtacccctgtcaccattttgcatgactaatgtgggagagtgggagaaatttaggaat 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gatgtacccctgtcaccattttgcatgactaatgtgggagagtgggagaaatttaggaat 476

                             
Query: 319 atagacatggacaaacag 336
           ||||||||||||||||||
Sbjct: 475 atagacatggacaaacag 458