Jatropha Genome Database

JcCA0312681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0312681.10 + phase: 0 
         (1479 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12228                                                            981   0.0  

>KJC_c12228 
          Length = 553

 Score =  981 bits (495), Expect = 0.0
 Identities = 543/551 (98%), Gaps = 6/551 (1%)
 Strand = Plus / Plus

                                                                       
Query: 134 gtaaagctgggaatgtcgcggagttgcttgaaaaagtagagagaagcgtaaaggtgaagc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaaagctgggaatgtcgcggagttgcttgaaaaagtagagagaagcgtaaaggtgaagc 60

                                                                       
Query: 194 gttatagtgaggctatagatgatcttaatgctgcaattgaggcagatccaacgctgtcag 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttatagtgaggctatagatgatcttaatgctgcaattgaggcagatccaacgctgtcag 120

                                                                       
Query: 254 aagcttattttcgtaaagcttccattcttcgtcagctatgcagatatgaagagtccgaaa 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagcttattttcgtaaagcttccattcttcgtcagctatgcagatatgaagagtccgaaa 180

                                                                       
Query: 314 aaagctataagaaagttttggagctaaaaccaaggcattcgactgcagataaagagcttt 373
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 aaagctataagaaag-tttggagctaaaacc-aggcattcgactgcagataaagagcttt 238

                                                                       
Query: 374 ctcaattgcatcaagctcaaagtgctctggatacagcttttactctctttgattctggtg 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctcaattgcatcaagctcaaagtgctctggatacagcttttactctctttgattctggtg 298

                                                                       
Query: 434 attataaaaaatctctggagtttgtggataaagttgtacttgttttctctccagcatgct 493
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 attat-aaaaatctctggagtttgtggataaagttgtacttgttttctctccagcatgct 357

                                                                       
Query: 494 caaaggcc-aaactcctaaaagttagattgctgttagcacttagggactattctgctgcc 552
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caaaggccaaaactcctaaaagttagattgctgttagcacttagggactattctgctgcc 417

                                                                       
Query: 553 atctctg-aaaccggg-tttattcttaaggaagatgaaaataatctagaggcactactgc 610
           ||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 418 atctctgaaaaccgggttttattcttaaggaagatgaaaaatatctagaggcactactgc 477

                                                                       
Query: 611 tccgtggtcgtgcctactactacttagctgatcatgatgttgcttcgaaacattatcaaa 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tccgtggtcgtgcctactactacttagctgatcatgatgttgcttcgaaacattatcaaa 537

                      
Query: 671 aaggccttcgt 681
           |||||||||||
Sbjct: 538 aaggccttcgt 548