Jatropha Genome Database
- JcCA0312671.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0312671.10 + phase: 1 /pseudo/partial
(1042 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c03870 525 e-149
KJC_c01536 151 4e-36
KJC_s14092 58 4e-08
>KJC_c03870
Length = 618
Score = 525 bits (265), Expect = e-149
Identities = 279/281 (99%), Gaps = 2/281 (0%)
Strand = Plus / Plus
Query: 171 agggaaattactacactggttcaatctgagtatctatttggtttcaaaagtagatcattt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agggaaattactacactggttcaatctgagtatctatttggtttcaaaagtagatcattt 399
Query: 231 tcttcagacagtggagatctagttgatgctgttgtccctttcatgggcgaatccattact 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcttcagacagtggagatctagttgatgctgttgtccctttcatgggcgaatccattact 459
Query: 291 gatggcaccttggcaaaattcttgaagaaacctggtgatagagttgaagttgatgagccc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatggcaccttggcaaaattcttgaagaaacctggtgatagagttgaagttgatgagccc 519
Query: 351 attgctcagattgaaactgacaaggtgaccattgatgtagctagtcctgaagctggcact 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attgctcagattgaaactgacaaggtgaccattgatgtagctagtcctgaagctggcact 579
Query: 411 attcaaaagttagtagcaaaggaaggtgagacggtggaacc 451
||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 580 attcaaaagtt-gtagcaaagg-aggtgagacggtggaacc 618
Score = 343 bits (173), Expect = 5e-94
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 atgatttggggaattattcgccgaaaagttgcttcttcttggggtaccggacaatcagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atgatttggggaattattcgccgaaaagttgcttcttcttggggtaccggacaatcagta 204
Query: 61 tcgagaattaggcctacaacgattaggccgagatgttttgcacgaaaagaggctattatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tcgagaattaggcctacaacgattaggccgagatgttttgcacgaaaagaggctattatc 264
Query: 121 agtggcaatggcttagagcttgtccgatgctttaattactccactttcttagg 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtggcaatggcttagagcttgtccgatgctttaattactccactttcttagg 317
>KJC_c01536
Length = 1425
Score = 151 bits (76), Expect = 4e-36
Identities = 187/224 (83%)
Strand = Plus / Plus
Query: 252 gttgatgctgttgtccctttcatgggcgaatccattactgatggcaccttggcaaaattc 311
||||| ||||| |||||||| ||||| ||||| || |||||||| || ||||||||||||
Sbjct: 169 gttgacgctgtcgtcccttttatgggtgaatcaatcactgatggaacattggcaaaattc 228
Query: 312 ttgaagaaacctggtgatagagttgaagttgatgagcccattgctcagattgaaactgac 371
|||||||| ||||||||| | || |||||||||||||| |||||||| ||||| || ||
Sbjct: 229 ttgaagaatcctggtgatcgggtggaagttgatgagccaattgctcaaattgagacagat 288
Query: 372 aaggtgaccattgatgtagctagtcctgaagctggcactattcaaaagttagtagcaaag 431
||||| || |||||||| |||||||| ||||| || || || |||| ||||| ||
Sbjct: 289 aaggttacaattgatgtggctagtccagaagccggtgtgataaaagagtttgtagccaaa 348
Query: 432 gaaggtgagacggtggaaccaggtaccaagattgctgtcatttc 475
||||| ||||| |||||||||||||| ||| ||||||| |||||
Sbjct: 349 gaaggggagactgtggaaccaggtacaaaggttgctgttatttc 392
Score = 121 bits (61), Expect = 4e-27
Identities = 172/209 (82%)
Strand = Plus / Plus
Query: 806 tctgattataaggatgcatttgtcgaaaaacatggagtgaaattgggatttatgtctgga 865
||||| ||||||||||| ||||| ||||| |||||||| || ||||| | |||||||||
Sbjct: 717 tctgaatataaggatgcttttgttgaaaagcatggagttaagttgggtctcatgtctgga 776
Query: 866 tttgtcaaagctgcagttagtgcacttcaataccagcctgttgtaaatgctgtcattgat 925
|| | || ||||| || |||| || || |||||||| || | ||||| |||||||||
Sbjct: 777 ttcataaaggctgctgtaagtgggctccagaaccagcctattattaatgcagtcattgat 836
Query: 926 ggagatgatatcatatacagagactacattgatattagcattgctgttggcactccaaag 985
|| |||||||| ||||| ||||| || || || || || || ||||||||||||||||||
Sbjct: 837 ggggatgatataatatatagagattatatagacatcagtatcgctgttggcactccaaag 896
Query: 986 ggacttgttgttccagttatccgtaatgc 1014
||||||||||| |||||||| || |||||
Sbjct: 897 ggacttgttgtcccagttattcgcaatgc 925
>KJC_s14092
Length = 532
Score = 58.0 bits (29), Expect = 4e-08
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 723 aggaaacgggttgcaacacgattaaaagattctcaaaatacatttgcaatgctgaccaca 782
|||||| | |||||||| ||||| || || |||||||| |||||||| ||| | || |||
Sbjct: 216 aggaaaagagttgcaacccgattgaaggactctcaaaacacatttgctatgttaacgaca 157
Query: 783 ttcaatgaggttgatat 799
|||||||| ||||||||
Sbjct: 156 ttcaatgaagttgatat 140
Score = 52.0 bits (26), Expect = 3e-06
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 806 tctgattataaggatgcatttgtcgaaaaacatggagtgaaattgggatttatgtctgga 865
||||| ||||||||||| ||||| ||||| |||||||| || ||||| | |||||||||
Sbjct: 117 tctgaatataaggatgcttttgttgaaaagcatggagttaagttgggtctcatgtctgga 58
Query: 866 tt 867
||
Sbjct: 57 tt 56