Jatropha Genome Database

JcCA0312651.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0312651.30 - phase: 1 /partial
         (473 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03044                                                            575   e-164

>KJC_c03044 
          Length = 716

 Score =  575 bits (290), Expect = e-164
 Identities = 333/341 (97%), Gaps = 6/341 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaagacct-ggctgaggatgccgctagaaa--ttgcaaa-gagaaagatatagacctg 56
           |||||||||| |||||||||||||||| | ||  ||||||| ||||||||||||||||||
Sbjct: 370 tcaaagaccttggctgaggatgccgcttggaaatttgcaaaagagaaagatatagacctg 429

                                                                       
Query: 57  gttgctataaatccagcaatggtgattggtcctcttctacagccaacacttaatacaagt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gttgctataaatccagcaatggtgattggtcctcttctacagccaacacttaatacaagt 489

                                                                       
Query: 117 gctgctgctgtattaagcttgatgaaaggagtacaaactttccccaatgcaacttttgga 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gctgctgctgtattaagcttgatgaaaggagtacaaactttccccaatgcaacttttgga 549

                                                                       
Query: 177 tgggtaaatgttaaggatgttgctaatgcacatattcaagcttttgagattccgtcagca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgggtaaatgttaaggatgttgctaatgcacatattcaagcttttgagattccgtcagca 609

                                                                       
Query: 237 agtggacgttactgtttggttgagacagttgcacactactcaaaggtggtggatac-ttt 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 610 agtggacgttactgtttggttgagacagttgcacactactcaaaggtggtggatacgttt 669

                                                    
Query: 296 gcgtgagctttaccccgatttccaatttccag-aaaagtgt 335
           |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 670 gcgtgagctttaccccgatttccaatttccagtaaaagtgt 710