Jatropha Genome Database

JcCA0312651.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0312651.20 + phase: 0 
         (1347 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09716                                                             52   4e-06

>KJC_c09716 
          Length = 530

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                       
Query: 901 tatatcgggtgcatgaagtctggacctgttctctctcaaaaaggggtaagatatcacgaa 960
           ||||| || ||||||||||| || || || ||  ||||||| || || | ||| || |||
Sbjct: 479 tatataggatgcatgaagtccggtccagtccttgctcaaaagggagtgaaataccatgaa 420

                                                 
Query: 961 ccagaatattggaaatttggagaagaaggtaacaagta 998
           || || |||||||||||||| |||||||| ||||||||
Sbjct: 419 cctgagtattggaaatttggggaagaaggaaacaagta 382