Jatropha Genome Database

JcCA0312601.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0312601.10 - phase: 0 /pseudo/partial
         (205 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09181                                                            260   1e-69

>KJC_c09181 
          Length = 657

 Score =  260 bits (131), Expect = 1e-69
 Identities = 138/139 (99%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaatgcacaacagaaacaaaacaaacgctggtttgacaaaattggccttgggaagatt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 524 tctaatgcacaacagaaacaaa-caaacgctggtttgacaaaattggccttgggaagatt 466

                                                                       
Query: 61  ggggacactggttatgctcctatcttattctccattgtgattgctcttatgttcctcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggggacactggttatgctcctatcttattctccattgtgattgctcttatgttcctcttc 406

                              
Query: 121 atcaactcagttctttcag 139
           |||||||||||||||||||
Sbjct: 405 atcaactcagttctttcag 387



 Score = 77.8 bits (39), Expect = 9e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 65  acactggttatgctcctatcttattctccattgtgattg 103
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acactggttatgctcctatcttattctccattgtgattg 39