Jatropha Genome Database

JcCA0312361.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0312361.10 + phase: 0 
         (438 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08030                                                            555   e-158

>KJC_c08030 
          Length = 383

 Score =  555 bits (280), Expect = e-158
 Identities = 308/312 (98%), Gaps = 4/312 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggaaggactcaaagccaaagcctgcaggaggtaagggcaaaggaaaggcagcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  atggggaaggactcaaagccaaagcctgcaggaggtaagggcaaaggaaaggcagcagga 135

                                                                       
Query: 61  ggtgcaagtgatgagaatgcttcaaagggtaagggtaaagctggaaaagctgatggactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ggtgcaagtgatgagaatgcttcaaagggtaagggtaaagctggaaaagctgatggactt 195

                                                                       
Query: 121 ggcacctgtacatatgttaaagctaggcatattttatgtgagaagcaaggtaagatcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggcacctgtacatatgttaaagctaggcatattttatgtgagaagcaaggtaagatcaat 255

                                                                       
Query: 181 gaagcataccagaaactgcaagatggttggcttaacaatggagacaaagttccaccagct 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 256 gaagcataccagaaactgcaagatggttggcttaac-atggagacaaagttccaccagct 314

                                                                       
Query: 241 gagtttgcaaagctagctgctgaatattcagaatgtccttctggaaagaagggtggagac 300
           ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 315 gagtttgcaaagctagctgctgaatattcag-atgtccttctgg-aagaa-ggtggagac 371

                       
Query: 301 cttggatggttt 312
           ||||||||||||
Sbjct: 372 cttggatggttt 383