Jatropha Genome Database

JcCA0311501.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311501.30 - phase: 1 /partial
         (386 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02645                                                            741   0.0  
KJC_s16182                                                            339   3e-93

>KJC_c02645 
          Length = 576

 Score =  741 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  agacatggaaaccgaagaagccgaagtaggagcatttctcgtagtccaggcagttatcgt 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agacatggaaaccgaagaagccgaagtaggagcatttctcgtagtccaggcagttatcgt 190

                                                                       
Query: 72  ggccgttacagggatcaaagccggagtcagagtccaattcgcagtcctagtcctagagat 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ggccgttacagggatcaaagccggagtcagagtccaattcgcagtcctagtcctagagat 250

                                                                       
Query: 132 aagcgaccttcaataagtgagggtctgaaatcgcgtctgggcccccgaattgatgatcaa 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagcgaccttcaataagtgagggtctgaaatcgcgtctgggcccccgaattgatgatcaa 310

                                                                       
Query: 192 cgctcattgaacaaaggaagattgaggtccagttctaggtccaggagtcgtggatcctca 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cgctcattgaacaaaggaagattgaggtccagttctaggtccaggagtcgtggatcctca 370

                                                                       
Query: 252 ctttctagatcttctgatgctgtacccccaaatcatcacagcaaaacaaccagcaggtct 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctttctagatcttctgatgctgtacccccaaatcatcacagcaaaacaaccagcaggtct 430

                                                                       
Query: 312 aggtcaagctcaccttctggtcagcagcggggtttggtttcgtatggtgacatcagtcct 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aggtcaagctcaccttctggtcagcagcggggtttggtttcgtatggtgacatcagtcct 490

                         
Query: 372 gatttgggaacgag 385
           ||||||||||||||
Sbjct: 491 gatttgggaacgag 504


>KJC_s16182 
          Length = 458

 Score =  339 bits (171), Expect = 3e-93
 Identities = 178/179 (99%), Gaps = 1/179 (0%)
 Strand = Plus / Minus

                                                                       
Query: 207 ggaagattgaggtccagttctaggtccaggagtcgtggatcctcactttctagatcttct 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggaagattgaggtccagttctaggtccaggagtcgtggatcctcactttctagatcttct 399

                                                                       
Query: 267 gatgctgtacccccaaatcatcacagcaaaacaaccagcaggtctaggtcaagctcacct 326
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gatgctgtacccccaa-tcatcacagcaaaacaaccagcaggtctaggtcaagctcacct 340

                                                                      
Query: 327 tctggtcagcagcggggtttggtttcgtatggtgacatcagtcctgatttgggaacgag 385
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tctggtcagcagcggggtttggtttcgtatggtgacatcagtcctgatttgggaacgag 281