Jatropha Genome Database

JcCA0311331.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311331.20 - phase: 0 
         (546 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01634                                                            121   2e-27

>KJC_c01634 
          Length = 813

 Score =  121 bits (61), Expect = 2e-27
 Identities = 178/217 (82%)
 Strand = Plus / Minus

                                                                       
Query: 253 tatcctcatgaggcaccaaaagtcaagtgccaaacaaaggtttatcatcctaatattgac 312
           ||||| |||||||||||||| || |||||| | || |||||||||||||| || || |||
Sbjct: 513 tatccacatgaggcaccaaaggttaagtgcaagaccaaggtttatcatcccaacatcgac 454

                                                                       
Query: 313 ttggaaggcaatgtgtgcctgaacattcttcgagaagactggaaacctgttctaaatata 372
           |||||||| ||||| ||||| |||||  | |||||||||||||||||||| || || |||
Sbjct: 453 ttggaaggaaatgtctgccttaacatcttgcgagaagactggaaacctgtcctcaacata 394

                                                                       
Query: 373 aacaccatcatttacggattatttcatctgtttacgcaaccaaatcgcgaggaccctttg 432
           || || || || || ||||||| |||||| || ||| ||||||||   ||||| ||| | 
Sbjct: 393 aatactattatctatggattatatcatcttttcacggaaccaaattatgaggatcctctt 334

                                                
Query: 433 aattctgatgcagctgctatgttgagagataatccaa 469
           |||  |||||| |||||  ||||||||||||| ||||
Sbjct: 333 aatcatgatgctgctgcagtgttgagagataacccaa 297



 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 90/108 (83%)
 Strand = Plus / Minus

                                                                       
Query: 65  tcaagaagcaaagtgctggggaattacgtcttcataaagacataagtgagttgaacctgc 124
           |||| ||||||| |||||| ||||| ||||||||||| || ||   |||| | |||||||
Sbjct: 701 tcaaaaagcaaactgctggagaattgcgtcttcataaggatatttctgagctaaacctgc 642

                                                           
Query: 125 caaaatcatgtaccatatccttcaccaatggaaaggatgacctgatga 172
           | ||||| ||| ||||| ||||| ||||||| ||||| ||||||||||
Sbjct: 641 ctaaatcttgtgccataaccttccccaatggcaaggacgacctgatga 594