Jatropha Genome Database

JcCA0310961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0310961.10 + phase: 0 /pseudo
         (1023 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04863                                                            107   5e-23
KJC_c00344                                                             76   2e-13
KJC_s18106                                                             70   1e-11

>KJC_c04863 
          Length = 720

 Score =  107 bits (54), Expect = 5e-23
 Identities = 105/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 269 tggaggaggttgctgcctgctgcaacgctgttcggttcttccaattatatgtgtataaaa 328
           |||||||||||||| || ||||||| ||  |||||||||  |||||||||||||| || |
Sbjct: 231 tggaggaggttgcttccagctgcaatgccattcggttctatcaattatatgtgtacaaga 290

                                                                       
Query: 329 gacgcgatatagctgctaacttagtgcagagagctgaaaggaaaggatataaggctattg 388
           |||| |||||| | ||| |  ||||||||||||||||||| || ||||||||||||||||
Sbjct: 291 gacgagatatatcagctcatctagtgcagagagctgaaagaaatggatataaggctattg 350

             
Query: 389 tc 390
           ||
Sbjct: 351 tc 352



 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 574 tggttaaagtctattacaaacttgccaattctgatcaaaggggtactcactcgtgaagat 633
           ||||||| ||| |||||||||||||||||||| || || || ||||| ||||||||||||
Sbjct: 536 tggttaaggtcaattacaaacttgccaattctcattaagggtgtacttactcgtgaagat 595

             
Query: 634 gc 635
           ||
Sbjct: 596 gc 597


>KJC_c00344 
          Length = 1503

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 128/158 (81%)
 Strand = Plus / Minus

                                                                       
Query: 664 ggaattattgtctccaatcatggagcacgacagctagattatactcctgcaactatttct 723
           ||||| || ||||||||||| ||||| || ||||| ||||||  |||||||||||||   
Sbjct: 637 ggaatcatcgtctccaatcacggagctcgccagcttgattatgttcctgcaactattatg 578

                                                                       
Query: 724 gctttagaagaggttgttgatgctgttagaggaaaatttccggttcttcttgatggggga 783
           ||||| |||||||||||  | ||||    ||| | | |||| ||| | |||||||| |||
Sbjct: 577 gctttggaagaggttgtgaaagctgcacaaggcagagttcctgttttccttgatggtgga 518

                                                 
Query: 784 gtgcgacggggaactgatgttttcaaggcattggcact 821
           || || || ||||| |||||||||||||||||||||||
Sbjct: 517 gttcgccgcggaacagatgttttcaaggcattggcact 480


>KJC_s18106 
          Length = 518

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 574 tggttaaagtctattacaaacttgccaattctgatcaaaggggtactcactcgtgaagat 633
           ||||||| ||| |||||||||||||||||||| || || || ||||| ||||||||||||
Sbjct: 156 tggttaaggtcaattacaaacttgccaattctcattaagggtgtacttactcgtgaagat 97

                                                                  
Query: 634 gccacgaaagccatggaagttggtgttgatggaattattgtctccaatcatggag 688
           || |  || ||  |||||||||| |||  ||| ||| | ||||| ||||||||||
Sbjct: 96  gcaataaaggctgtggaagttggcgtttctgggattgtggtctctaatcatggag 42