Jatropha Genome Database
- JcCA0310901.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310901.20 + phase: 2 /pseudo/partial
(578 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c08090 773 0.0
KJC_c00274 426 e-119
KJC_c00839 315 6e-86
KJC_c00222 220 3e-57
KJC_s17400 157 4e-38
KJC_c11559 84 4e-16
>KJC_c08090
Length = 452
Score = 773 bits (390), Expect = 0.0
Identities = 403/406 (99%), Gaps = 1/406 (0%)
Strand = Plus / Plus
Query: 40 cttgaaggagctcaaggatctccagaaggatcctcctacctcttgcagcgctggtccggt 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgaaggagctcaaggatctccagaaggatcctcctacctcttgcagcgctggtccggt 60
Query: 100 agctgaggacatgtttcactggcaagcaacaataatgggtcctcctgacagtccttacac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agctgaggacatgtttcactggcaagcaacaataatgggtcctcctgacagtccttacac 120
Query: 160 tggaggcgtgtttctagttactattcattttcctcctgattatccatttaagccacctaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaggcgtgtttctagttactattcattttcctcctgattatccatttaagccacctaa 180
Query: 220 ggttgcattcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgcct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggttgcattcaggacaaaggtttttcacccaaatattaacagtaatggcagcatttgcct 240
Query: 280 tgacattctaaaggagcagtggagcccagccctgacaatatctaaggtgttgctctccat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgacattctaaaggagcagtggagcccagccctgacaatatctaaggtgttgctctccat 300
Query: 340 atgttccctcttgacggacccaaacccagatgatcccttggtgccagaaattgctcacat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgttccctcttgacggacccaaacccagatgatcccttggtgccagaaattgctcacat 360
Query: 400 gtacaagacagacagggccaagtacgaggcaactgctaggagctgg 445
||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct: 361 gtacaag-cagacaggggctagtacgaggcaactgctaggagctgg 405
>KJC_c00274
Length = 787
Score = 426 bits (215), Expect = e-119
Identities = 386/443 (87%)
Strand = Plus / Minus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atggcatcgaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 617
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||| || || || || || |||||||| || |||||||||||||| |||||||||
Sbjct: 616 tgcagcgcaggccctgttgcggaagacatgttccattggcaagcaacaattatgggtcct 557
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||| ||||| || | || || ||||||||||| || |||||||||||||| || |||
Sbjct: 556 cctgatagtccatatgcaggtggagtgtttctagtgacgattcattttcctccagactat 497
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 496 ccatttaaaccaccgaaggttgcattcaggacaaaggtctttcaccccaatatcaacagc 437
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
||||| |||||||||||||| ||| | ||||||||||||||||| ||||| || || ||
Sbjct: 436 aatggtagcatttgccttgatattttgaaggagcagtggagccctgcccttaccatttcc 377
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| || |||||||||||||| || || ||||| ||||||
Sbjct: 376 aaggtgttgctttcaatttgttctctattgacggacccaaatcctgacgatccgttggtg 317
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
||||||||||| |||||||| ||||| || ||| ||| ||||||||||| || ||||||
Sbjct: 316 ccagaaattgcccacatgtataagactgataggagcaaatacgaggcaacagcaaggagc 257
Query: 443 tggacacagaagtatgccatggg 465
||||| ||||||||||| |||||
Sbjct: 256 tggacccagaagtatgctatggg 234
>KJC_c00839
Length = 808
Score = 315 bits (159), Expect = 6e-86
Identities = 372/443 (83%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || ||||||||||||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 59 atggcgtcgaagcggatcttgaaggaactcaaggatttacagaaggatcctcccacatca 118
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||||||||| || ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 119 tgcagcgctggtcccgttgctgaagacatgtttcattggcaagctacgatcatgggtccc 178
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
||||||||||| || | || || || || || |||||||||||||| ||||| ||||||
Sbjct: 179 cctgacagtccatatgcagggggtgttttccttgttactattcatttccctccggattat 238
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
||||||||||| || ||||| || ||||| |||||||| || |||||||||||||||||
Sbjct: 239 ccatttaagcctcccaaggtggctttcagaacaaaggtattccacccaaatattaacagc 298
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
|| || |||||||| |||||||| | |||||||| |||||||| || || || ||||||
Sbjct: 299 aacgggagcatttgtcttgacatattgaaggagcaatggagccctgctctaaccatatct 358
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||||||||| || || ||||| | |||||||| || || || |||||||| || |||
Sbjct: 359 aaggtgttgctttcaatttgttctttgttgacggatcccaatcctgatgatccgttagtg 418
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
||||| || || ||||||||||||||||||||| ||||| ||| |||| ||||| |||
Sbjct: 419 ccagagatagcacacatgtacaagacagacaggaataagtatgagacaaccgctagaagc 478
Query: 443 tggacacagaagtatgccatggg 465
||||| || |||||||| |||||
Sbjct: 479 tggactcaaaagtatgcaatggg 501
>KJC_c00222
Length = 936
Score = 220 bits (111), Expect = 3e-57
Identities = 360/443 (81%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
|||||||||||||| || |||||||| ||||||||| | ||||| ||||| ||||| |||
Sbjct: 201 atggcttccaagcgtattttgaaggaactcaaggatttgcagaaagatccacctacttct 260
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
||||| || ||||| |||||||| |||||||| |||||||||||||| || ||||| ||
Sbjct: 261 tgcagtgcaggtcctgtagctgaagacatgttccactggcaagcaaccatcatgggacca 320
Query: 143 cctgacagtccttacactggaggcgtgtttctagttactattcattttcctcctgattat 202
|||| ||||| || | ||||| || |||||||| ||||| ||||||||||| ||||||
Sbjct: 321 actgatagtccatatgcaggaggtgtatttctagtcactatccattttcctccagattat 380
Query: 203 ccatttaagccacctaaggttgcattcaggacaaaggtttttcacccaaatattaacagt 262
|| || ||||| || ||||||||||| ||||| ||||| ||||| ||||| || ||||||
Sbjct: 381 cctttcaagcctccgaaggttgcatttaggaccaaggtgtttcatccaaacataaacagt 440
Query: 263 aatggcagcatttgccttgacattctaaaggagcagtggagcccagccctgacaatatct 322
||||| |||||||| ||||| || || || || || |||||||| || || || || |||
Sbjct: 441 aatggaagcatttgtcttgatatcctcaaagaacaatggagccctgctctcaccatttct 500
Query: 323 aaggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtg 382
||||| ||||| || || || || | |||| || ||||| || ||||| || | ||
Sbjct: 501 aaggtattgctatctatttgctcattgctgactgatccaaatcccgatgacccacttgtc 560
Query: 383 ccagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagc 442
||||| ||||| || ||||| ||||| || | || ||||| || |||||||| | |||
Sbjct: 561 ccagagattgcccatatgtataagactgatcgagcaaagtatgaagcaactgcacgcagc 620
Query: 443 tggacacagaagtatgccatggg 465
|||||||||||||||||||||||
Sbjct: 621 tggacacagaagtatgccatggg 643
>KJC_s17400
Length = 302
Score = 157 bits (79), Expect = 4e-38
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 23 atggcttccaagcggatcttgaaggagctcaaggatctccagaaggatcctcctacctct 82
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 138 atggcatcgaagcggatcttgaaggagctcaaggatttccagaaggatcctcctacctct 197
Query: 83 tgcagcgctggtccggtagctgaggacatgtttcactggcaagcaacaataatgggtcct 142
|||||||| || || || || || |||||||| || |||||||||||||| |||||||||
Sbjct: 198 tgcagcgcaggccctgttgcggaagacatgttccattggcaagcaacaattatgggtcct 257
Query: 143 cctgacagtccttacactggaggcgtgtttctagt 177
||||| ||||| || | || || |||||||||||
Sbjct: 258 cctgatagtccatatgcaggtggagtgtttctagt 292
>KJC_c11559
Length = 545
Score = 83.8 bits (42), Expect = 4e-16
Identities = 117/142 (82%)
Strand = Plus / Plus
Query: 324 aggtgttgctctccatatgttccctcttgacggacccaaacccagatgatcccttggtgc 383
|||||||||| || || ||||| | |||||||| || || || |||||||| || ||||
Sbjct: 180 aggtgttgctttcaatttgttctttgttgacggatcccaatcctgatgatccgttagtgc 239
Query: 384 cagaaattgctcacatgtacaagacagacagggccaagtacgaggcaactgctaggagct 443
|||| || || ||||||||||||||||||||| ||||| ||| |||| ||||| ||||
Sbjct: 240 cagagatagcacacatgtacaagacagacaggaataagtatgagacaaccgctagaagct 299
Query: 444 ggacacagaagtatgccatggg 465
|||| || |||||||| |||||
Sbjct: 300 ggactcaaaagtatgcaatggg 321