Jatropha Genome Database

JcCA0310551.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0310551.10 + phase: 2 /pseudo/partial
         (427 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00967                                                            751   0.0  

>KJC_c00967 
          Length = 1010

 Score =  751 bits (379), Expect = 0.0
 Identities = 420/438 (95%), Gaps = 11/438 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 395

                                                                       
Query: 61  gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 455

                                                                       
Query: 121 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 515

                                                                       
Query: 181 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagnnnnn 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 516 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagaaaaa 575

                                                                       
Query: 241 nnggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 635

                                                                       
Query: 301 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 695

                                                                       
Query: 361 gaagaggaggagat-----------ataccattgatgttggtaacagcagtcagcctagg 409
           ||||||||||||||           |||||||||||||||||||||||||||||||||||
Sbjct: 696 gaagaggaggagatatacttgccagataccattgatgttggtaacagcagtcagcctagg 755

                             
Query: 410 tcaactggatgtgagtgc 427
           ||||||||||||||||||
Sbjct: 756 tcaactggatgtgagtgc 773