Jatropha Genome Database
- JcCA0310141.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310141.20 - phase: 2 /pseudo
(988 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c04303 1243 0.0
KJC_s18986 367 e-101
>KJC_c04303
Length = 803
Score = 1243 bits (627), Expect = 0.0
Identities = 641/643 (99%), Gaps = 2/643 (0%)
Strand = Plus / Plus
Query: 272 caggaactctctcactggaatgcccaatataaggaaaagtttggatttatatttcttata 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 caggaactctctcactggaatgcccaatataaggaaaagtttggatttatatttcttata 218
Query: 332 tgtgcatcaggaaggagtactactgaaatacttgctgaattaaagaaacggtaccaaaac 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgtgcatcaggaaggagtactactgaaatacttgctgaattaaagaaacggtaccaaaac 278
Query: 392 agacccatagttgaatttgagattgcagctcaagagcaaatgaaaataacagaactacgt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agacccatagttgaatttgagattgcagctcaagagcaaatgaaaataacagaactacgt 338
Query: 452 cttggaaagctcttctcaactaaaataaatgctgcttcaactggtaaccagcattccaca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttggaaagctcttctcaactaaaataaatgctgcttcaactggtaaccagcattccaca 398
Query: 512 agttttggagcaaaagcagaagaagatcgtgtgggcattattggaggacatttgactgct 571
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ag-tttggagcaaaagcagaagaagatcgtgtgggcattattggaggacatttgactgct 457
Query: 572 gctctcaacttttcatctggaaaggcatctcaaactccaactcgaacccgtccacccatt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gctctcaacttttcatctggaaaggcatctcaaactccaactcgaacccgtccacccatt 517
Query: 632 accactcatgtattggatgtttctcggggttgtccagctggcggtgttgaggtgtgtttg 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 accactcatgtattggatgtttctcggggttgtccagctggcggtgttgaggtgtgtttg 577
Query: 692 gagatgtggaatggcactcaaccccgtccccttttcggtgagataggtgtagacagttgg 751
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 578 gagatgtggaatggcactcaaccccgt-cccttttcggtgagataggtgtagacagttgg 636
Query: 752 gtagttcagggggcttcaactacagatgctgacgggcgatgtggtcaactgatgagcatg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtagttcagggggcttcaactacagatgctgacgggcgatgtggtcaactgatgagcatg 696
Query: 812 gttgatgttgtgaacccaggaatatacagaataagtttcaatacaggcaagtattgtcca 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gttgatgttgtgaacccaggaatatacagaataagtttcaatacaggcaagtattgtcca 756
Query: 872 tctgggttctttccttatgtttctattgtgtttgaaatcagag 914
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tctgggttctttccttatgtttctattgtgtttgaaatcagag 799
Score = 115 bits (58), Expect = 2e-25
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 165 gtggagcaagggagagcaatcaactgctttagcaactgctactgattccagtttacag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gtggagcaagggagagcaatcaactgctttagcaactgctactgattccagtttacag 161
>KJC_s18986
Length = 199
Score = 367 bits (185), Expect = e-101
Identities = 192/193 (99%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 221 agtcttgaaaaagctatccagcgcttttccttctggtccacatgccctttgcaggaactc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 agtcttgaaaaagctatccagcgcttttccttctggtccacatgccctttgcaggaactc 66
Query: 281 tctcactggaatgcccaatataaggaaaagtttggatttatatttcttatatgtgcatca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tctcactggaatgcccaatataaggaaaagtttggatttatatttcttatatgtgcatca 126
Query: 341 ggaaggagtactactgaaatacttgctgaattaaagaaacggt-accaaaacagacccat 399
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 127 ggaaggagtactactgaaatacttgctgaattaaagaaacggtaaccaaaacagacccat 186
Query: 400 agttgaatttgag 412
|||||||||||||
Sbjct: 187 agttgaatttgag 199