Jatropha Genome Database

JcCA0310021.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0310021.20 + phase: 1 /partial
         (713 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_s16011                                                            167   5e-41
KJC_c07772                                                             80   8e-15
KJC_c01399                                                             52   2e-06

>KJC_s16011 
          Length = 510

 Score =  167 bits (84), Expect = 5e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 485 tggatttccggctcggatactacctatgcaaatgtcagttccacagccaccatttcttcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggatttccggctcggatactacctatgcaaatgtcagttccacagccaccatttcttcc 60

                                   
Query: 545 ttttgttggtggaggagggtcttc 568
           ||||||||||||||||||||||||
Sbjct: 61  ttttgttggtggaggagggtcttc 84


>KJC_c07772 
          Length = 548

 Score = 79.8 bits (40), Expect = 8e-15
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                       
Query: 273 aaggtggataaagcttcagtgcttgataatgcaatcgagtatctaaagacccttcagctt 332
           |||||||| ||||||||| |||| ||| | || || |||||| ||||||| |||||||||
Sbjct: 443 aaggtggacaaagcttcaatgctcgatgaggctattgagtatttaaagacacttcagctt 384

                                   
Query: 333 caagtacagataatgtcaatggga 356
           || |||||||| ||||||||||||
Sbjct: 383 caggtacagattatgtcaatggga 360


>KJC_c01399 
          Length = 1830

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 273 aaggtggataaagcttcagtgcttgataatgcaatcgagtatctaaagacccttcagctt 332
           |||||||| ||||||||| |||| ||| | || || |||||| ||||||| |||||||||
Sbjct: 906 aaggtggacaaagcttcaatgctcgatgaggctattgagtatttaaagacacttcagctt 847

             
Query: 333 ca 334
           ||
Sbjct: 846 ca 845