Jatropha Genome Database

JcCA0309961.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309961.30 - phase: 2 /pseudo/partial
         (280 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00655                                                             88   1e-17

>KJC_c00655 
          Length = 1575

 Score = 87.7 bits (44), Expect = 1e-17
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                       
Query: 193 catgggatttggtcccctgattccaacagaatctgaaaggtccttaatggagcgagttag 252
           |||||||||||||||||| || ||||||||   ||| ||||| |||||||||||||| ||
Sbjct: 782 catgggatttggtcccctcatcccaacagagagtgagaggtctttaatggagcgagtgag 841

                                       
Query: 253 acaagaattgaagattgaattaaaacag 280
            ||||||||||||  |||||||||||||
Sbjct: 842 gcaagaattgaagcatgaattaaaacag 869