Jatropha Genome Database

JcCA0309451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309451.10 + phase: 0 
         (1512 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04568                                                             60   2e-08

>KJC_c04568 
          Length = 884

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 91/110 (82%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                       
Query: 788 aaggcaaagaagatgatcttgttgatgttcttctgaatcttcaagatcaagataatcttg 847
           ||||| |||| ||||||||||||||||| ||| |||  |||||||| || |  |||||||
Sbjct: 226 aaggccaagatgatgatcttgttgatgt-cttttgaggcttcaagagcatggaaatcttg 168

                                                             
Query: 848 aattccctttgaccacagaaaatataaaagcagtcatgctggacattttc 897
           |||| || ||||| || || ||||| || |||||||| ||||| ||||||
Sbjct: 167 aatttccgttgacgactgataatatcaaggcagtcatcctggatattttc 118