Jatropha Genome Database

JcCA0309351.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309351.20 - phase: 0 /partial
         (595 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06112                                                            993   0.0  

>KJC_c06112 
          Length = 791

 Score =  993 bits (501), Expect = 0.0
 Identities = 529/533 (99%), Gaps = 4/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 65  tcaagatcgcgtgtcttaattctgctaatccggact-caggaaaagggaaaagtaaatca 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1   tcaagatcgcgtgtcttaattctgctaatccggactacaggaaaagggaaaagtaaatca 60

                                                                       
Query: 124 tcaaataaaaagatttctcatgggtttcaattggttgaaggaaaatccggccatgatatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaaataaaaagatttctcatgggtttcaattggttgaaggaaaatccggccatgatatg 120

                                                                       
Query: 184 gaagattatcatgtggccgagtaccggaaa-ttcaagaatcacgagcttggattatttgc 242
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 gaagattatcatgtggccgagtaccggaaaattcaagaatcacgagcttggattatttgc 180

                                                                       
Query: 243 tatctttgatggtcatcttggggatcgagtccctagttatttgaaagataatctattcct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatctttgatggtcatcttggggatcgagtccctagttatttgaaagataatctattcct 240

                                                                       
Query: 303 taacatccttcaagagccaaacttttgggatgaccctaagactgcaattaaaaatgccta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taacatccttcaagagccaaacttttgggatgaccctaagactgcaattaaaaatgccta 300

                                                                       
Query: 363 tagagccactgataagtacatattagacaattctatgcaattggggcctggtggctctac 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagagccactgataagtacatattagacaattctatgcaattggggcctggtggctctac 360

                                                                       
Query: 423 tgctgttactgctattgtaattgatggaaaagacttatgggtggccaatgttggtgattc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgctgttactgctattgtaattgatggaaaagacttatgggtggccaatgttggtgattc 420

                                                                       
Query: 483 tagagctgttgtatgtgaaagaggctgtgccaaccagcttactgtggaccatgagccaca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagagctgttgtatgtgaaagaggctgtgccaaccagcttactgtggaccatgagccaca 480

                                                                
Query: 543 cactgaacgtaaaaggatagaaaagcagggtggttttgttacaactcttcctg 595
           ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 481 cactgaacgtaaaaggatagaaaagca-ggtgg-tttgttacaactcttcctg 531