Jatropha Genome Database

JcCA0308991.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308991.10 - phase: 0 /partial
         (634 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08775                                                            153   6e-37
KJC_c04405                                                             50   7e-06

>KJC_c08775 
          Length = 580

 Score =  153 bits (77), Expect = 6e-37
 Identities = 171/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 434 aggttgcaattatccgtcatcctcgtattggtgaatatgcatttggtttcatcacatcaa 493
           ||||||| ||||| |||||||||||   ||||||||||||||||||||||||||||||| 
Sbjct: 534 aggttgccattattcgtcatcctcgccatggtgaatatgcatttggtttcatcacatcat 475

                                                                       
Query: 494 ctgtcatccttcagagagataacgaagatgaagaattatgcagtgtttttgtcccaacaa 553
           ||||  |||||||||||||  | | ||||||||| |||||||| |||| |||||||||||
Sbjct: 474 ctgtg-tccttcagagagaagatggagatgaagagttatgcagcgtttatgtcccaacaa 416

                                                                       
Query: 554 accatctgtacattggtgatatattccttgtgaactctaaagacattataagacccaatt 613
           | |||||||||||||| || ||||| || || || ||| ||||  | |||||||| || |
Sbjct: 415 atcatctgtacattggcgacatatttctggtcaattctgaagaggtcataagaccaaact 356

                                
Query: 614 tgtcgatccgagaaggcatag 634
           |||| || |||||||||||||
Sbjct: 355 tgtctattcgagaaggcatag 335


>KJC_c04405 
          Length = 686

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 atgactggatgtgtcgttcttttccccatagctgtgacattctttattacatggtggctt 180
           ||||||||||||||  |  | ||||| |||||||| || |||| | | ||||||||| ||
Sbjct: 411 atgactggatgtgtaatcttattcccaatagctgtcactttctatgtaacatggtggttt 470

                            
Query: 181 attcagtttgttgatgg 197
           ||||| |||||||||||
Sbjct: 471 attcattttgttgatgg 487