Jatropha Genome Database
- JcCA0308491.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0308491.20 - phase: 2 /pseudo/partial
(1223 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c11030 1152 0.0
KJC_c01055 394 e-109
>KJC_c11030
Length = 600
Score = 1152 bits (581), Expect = 0.0
Identities = 588/589 (99%), Gaps = 1/589 (0%)
Strand = Plus / Minus
Query: 295 gttagcgcgtttatttcgttactatgctggttgggcggataagattcatgggctaacagt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gttagcgcgtttatttcgttactatgctggttgggcggataagattcatgggctaacagt 541
Query: 355 tcctggagacagtaatcaccatattcaagtattgcatgaacctattggagttgcagggca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcctggagacagtaatcaccatattcaagtattgcatgaacctattggagttgcagggca 481
Query: 415 aattattccatggaattttcctcttatcttgtttgcttggaaagttggtcctgcattagc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aattattccatggaattttcctcttatcttgtttgcttggaaagttggtcctgcattagc 421
Query: 475 ttgtggtaatactattgtactgaaaacagcagaacagacacctcttactgctctctatgc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttgtggtaatactattgtactgaaaacagcagaacagacacctcttactgctctctatgc 361
Query: 535 aggaaagctcttccatgatgctggccttcctccaggtgttctgaatgtagtttcaggcta 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggaaagctcttccatgatgctggccttcctccaggtgttctgaatgtagtttcaggcta 301
Query: 595 tggtccaactgctggttcagctcttgccagtcacatggatgtagacaagatttctttcac 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tggtccaactgctggttcagctcttgccagtcacatggatgtagacaagatttctttcac 241
Query: 655 aggatcaactgagacaggcaaggttatcctcgaattggctgctaaaagtaatcttaagcc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggatcaactgagacaggcaaggttatcctcgaattggctgctaaaagtaatcttaagcc 181
Query: 715 agttacattagaacttggagggaaatcacctttcatagtatgcgaagatgctgatattga 774
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agttacattagaacttgga-ggaaatcacctttcatagtatgcgaagatgctgatattga 122
Query: 775 caaggctgtggagcttgcacactttgccttgttctttaatcagggccaatgttgttgtgc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaggctgtggagcttgcacactttgccttgttctttaatcagggccaatgttgttgtgc 62
Query: 835 tgggtctcgtacgtatgtacacgagcgcgtgtatgatgagtttgtagag 883
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggtctcgtacgtatgtacacgagcgcgtgtatgatgagtttgtagag 13
>KJC_c01055
Length = 1668
Score = 394 bits (199), Expect = e-109
Identities = 873/1095 (79%), Gaps = 2/1095 (0%)
Strand = Plus / Minus
Query: 62 gaagtgattgctcatgtagctgaaggtgatgctgaagatatagacagggcagtagcagct 121
||||||||||| ||||| ||||||||||||| |||||| ||| | || ||||| | |||
Sbjct: 1497 gaagtgattgcccatgttgctgaaggtgatgttgaagacataaatagagcagtgtctgct 1438
Query: 122 gctcgcaaagcgtttgatgaaggaccctggccaaaaatgaccccttatgaaaggtcacgg 181
|||||||| || || |||||||| || |||||||| |||||| |||||||||||||| |
Sbjct: 1437 gctcgcaaggcattcgatgaagggccatggccaaagatgaccgcttatgaaaggtcaaga 1378
Query: 182 attctgttgcgttttgctgatttagttgagaagcacaacgatgagcttgcagctttagag 241
|| ||||||| || |||||||| |||| | ||| || ||||| |||| || | |||
Sbjct: 1377 ataatgttgcgattcgctgatttgcttgaaatgcataatgatgaaattgctgcacttgag 1318
Query: 242 acatggaataatgggaagccttatgaacagtctgctaaatctgagttacccatgttagcg 301
|| ||| |||||||||| || ||||||||| |||||||| |||| |||| ||| | ||
Sbjct: 1317 acttgggataatgggaaaccgtatgaacaggctgctaaagctgaaatacctatggttgca 1258
Query: 302 cgtttatttcgttactatgctggttgggcggataagattcatgggctaacagttcctgga 361
|| ||||||| ||||||||||||||||| |||||||| || || || |||||||| |
Sbjct: 1257 cgcctatttcgatactatgctggttgggcagataagatccacggtcttacagttccagct 1198
Query: 362 gacagtaatcaccatattcaagtattgcatgaacctattggagttgcagggcaaattatt 421
|| | | || ||| | ||| |||||| ||||| ||||| |||||||| || ||||||
Sbjct: 1197 gatgggcagcatcatgtgcaaacattgcacgaaccgattggtgttgcaggtcagattatt 1138
Query: 422 ccatggaattttcctcttatcttgtttgcttggaaagttggtcctgcattagcttgtggt 481
||||||||||| |||||| | ||| ||||||||||||||| || ||||| || |||||
Sbjct: 1137 ccatggaatttccctcttctgatgtatgcttggaaagttggaccggcattggcatgtggc 1078
Query: 482 aatactattgtactgaaaacagcagaacagacacctcttactgctctctatgcaggaaag 541
||||| |||| | || |||||||| |||||||| | | ||| | |||| | |||
Sbjct: 1077 aatacggttgttattaagacagcagagcagacaccattgtccgctttttatgtatctaag 1018
Query: 542 ctcttccatgatgctggccttcctccaggtgttctgaatgtagtttcaggctatggtcca 601
|| || ||||| ||||| ||||| ||||||| ||||||| ||||| || | ||| |||
Sbjct: 1017 ctatttcatgaggctggacttccagaaggtgttttgaatgtggtttctggttttggccca 958
Query: 602 actgctggttcagctcttgccagtcacatggatgtagacaagatttctttcacaggatca 661
||||||||| | |||||||| || || ||| |||| || ||| || ||||||| ||||||
Sbjct: 957 actgctggtgctgctcttgcgagccatatgaatgtggataagcttgctttcaccggatca 898
Query: 662 actgagacaggcaaggttatcctcgaattggctgctaaaagtaatcttaagccagttaca 721
|| || ||||| || ||| | || || || || || | ||| |||||||||||||| ||
Sbjct: 897 acagatacaggaaaagttgttcttgagttagcagcaagaagcaatcttaagccagtaact 838
Query: 722 ttagaacttggagggaaatcacctttcatagtatgcgaagatgctgatattgacaaggct 781
|| ||||||||||||||||| ||||| || || ||||| ||||||||| ||||| |||||
Sbjct: 837 ttggaacttggagggaaatcgccttttattgtttgcgaggatgctgatgttgaccaggct 778
Query: 782 gtggagcttgcacactttgccttgttctttaatcagggccaatgttgttgtgctgggtct 841
|| |||||||| |||||||| || |||||||||||||| ||||| || |||||||| ||
Sbjct: 777 gttgagcttgctcactttgctttattctttaatcagggtcaatgctgctgtgctggttcc 718
Query: 842 cgtacgtatgtacacgagcgcgtgtatgatgagtttgtagagaaagcaaaggcacgtgct 901
|| || ||||| || ||||| | |||||||| || |||| |||||||||||| | |||
Sbjct: 717 cgcacatatgttcatgagcgtatatatgatgaattcatagaaaaagcaaaggcaagggct 658
Query: 902 gtgagacgtgttgttggtgatccctttaagaag-ggtgttgaacaaggccctcagatcga 960
| | ||| |||||||||||| ||||| ||| | ||| |||||||||| |||||| | ||
Sbjct: 657 ataaaacgggttgttggtgat-cctttcagaggaggtattgaacaaggtcctcaggttga 599
Query: 961 tgatgagcaatttcagaaggtcctgaggtatataaaatctggcattgaaagcaatggtaa 1020
| || |||||| ||||| | || ||||| |||| |||||||||||||| | ||
Sbjct: 598 ttcagaacaatttgagaagatactaaggtacataaggtctggcattgaaagtggagctac 539
Query: 1021 actcgaatgtggaggtgaaaggcttggctccaagggctactttatccagcccactgtttt 1080
||| ||| |||||| || || |||| |||||||||| | |||||||||||| |||||
Sbjct: 538 acttgaagctggaggagatagatttggtaccaagggctattatatccagcccacagtttt 479
Query: 1081 ctcgaatgttcaggaagatatgttgatagcaaaagatgagatctttggtccagtgcaatc 1140
||| |||||| |||| |||||| | ||||| ||||||||||| || ||||||||||| ||
Sbjct: 478 ctcaaatgttaaggatgatatgcttatagcgaaagatgagatattcggtccagtgcagtc 419
Query: 1141 aatcttgaagttcaa 1155
|||||||| |||||
Sbjct: 418 catcttgaaattcaa 404