Jatropha Genome Database
- JcCA0308421.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0308421.10 - phase: 0 /pseudo/partial
(708 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01548 117 4e-26
KJC_c02261 74 5e-13
KJC_c01971 60 8e-09
>KJC_c01548
Length = 946
Score = 117 bits (59), Expect = 4e-26
Identities = 149/179 (83%)
Strand = Plus / Plus
Query: 190 attgcaccagaagtcttgtcaaggaaagaatatgatgggaagatagcagatgtttggtct 249
||||| ||||| || |||| ||| ||||||||||||| ||||| ||||| || |||||
Sbjct: 513 attgctccagaggtgttgttgaggcaagaatatgatggcaagattgcagacgtgtggtca 572
Query: 250 tgtggggttaccttgtatgtgatgctagttggcgcttatccatttgaagatcctgaagat 309
|||||||| || |||||||||||||| ||||| || ||||| ||||| |||||||| ||
Sbjct: 573 tgtggggtaacattgtatgtgatgctggttggagcatatccttttgaggatcctgatgag 632
Query: 310 ccaagaaacttcagaaaaactattcagaggattctgagtgtccactattccattcctga 368
|||| ||||||| || || || ||||| ||||||| |||||| ||||||||||||||
Sbjct: 633 ccaaaggacttcaggaagacaatacagagaattctgaatgtccagtattccattcctga 691
>KJC_c02261
Length = 1376
Score = 73.8 bits (37), Expect = 5e-13
Identities = 202/257 (78%)
Strand = Plus / Minus
Query: 45 gcaaatttgccatagagatcttaagctggaaaatacccttttggatggaagctcagcgcc 104
||||||||||||||||||| | ||||| ||||||||| | ||||||| ||| |||| ||
Sbjct: 725 gcaaatttgccatagagatttgaagctagaaaataccttgctggatggcagcccagcacc 666
Query: 105 gcaactcaagatatgtgactttggctattccaagtcttctgtattgcattctcaacctaa 164
| || || || ||||| ||||| ||||| ||||| || | ||||||| ||| ||
Sbjct: 665 acgtctgaaaatctgtgattttggttattctaagtcatccttgctgcattcaagacccaa 606
Query: 165 gtctacagtgggaacaccagcctatattgcaccagaagtcttgtcaaggaaagaatatga 224
|| ||||| || || || || |||||||| ||||| || | || |||| |||||||||
Sbjct: 605 atccacagttggcactccggcttatattgccccagaggttctttctaggagagaatatga 546
Query: 225 tgggaagatagcagatgtttggtcttgtggggttaccttgtatgtgatgctagttggcgc 284
||| ||||| |||||||| ||||| ||||| || || ||||||| ||||| || || ||
Sbjct: 545 tggcaagatggcagatgtatggtcctgtggagtgactctgtatgttatgctggtaggagc 486
Query: 285 ttatccatttgaagatc 301
|| |||||||||||||
Sbjct: 485 atacccatttgaagatc 469
>KJC_c01971
Length = 1527
Score = 60.0 bits (30), Expect = 8e-09
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 112 aagatatgtgactttggctattccaagtcttctgtattgcattctcaacctaagtctaca 171
||||| ||||||||||| || || ||||| || || | ||||| ||||| || |||||
Sbjct: 755 aagatttgtgactttggttactctaagtcatcggtgctccattcacaaccaaactctact 814
Query: 172 gtgggaacaccagcctatattgcaccagaagtcttgtcaaggaaagaatatgatgggaag 231
|| ||||| || || ||||||||||| ||||| || | ||| ||||||||||| |||
Sbjct: 815 gttggaactcctgcgtatattgcacctgaagtgttacttaagaaggaatatgatggcaag 874
Query: 232 atagcagatgtttggtcttgtggggt 257
|| |||||||| ||||| ||||||||
Sbjct: 875 attgcagatgtatggtcatgtggggt 900