Jatropha Genome Database

JcCA0308351.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308351.20 - phase: 0 /pseudo/partial
         (660 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11091                                                            119   9e-27
KJC_c06897                                                             88   3e-17

>KJC_c11091 
          Length = 546

 Score =  119 bits (60), Expect = 9e-27
 Identities = 83/88 (94%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 45  aggaggaatgcgaaatggagtcgccctcaagctgctataattccccaatttccatctttc 104
           |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||
Sbjct: 309 aggaggaatgcgaaatggagtccccctcaagctgctataatt-cccaatttccatc-ttc 366

                                       
Query: 105 caatgcgtagtttgaaagttaaaaatag 132
           |||||||||||||  |||||||||||||
Sbjct: 367 caatgcgtagttttgaagttaaaaatag 394


>KJC_c06897 
          Length = 491

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 78/84 (92%), Gaps = 4/84 (4%)
 Strand = Plus / Minus

                                                                       
Query: 45  aggaggaatgcgaaatggagtcgccctcaagctgctataattccccaatttccatctttc 104
           ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 473 aggaggaatgcgaaatg-agtcgccctcaagctgctataatt-cccaatttccatc-ttc 417

                                   
Query: 105 caatgcgtagtttgaaagttaaaa 128
           ||||||| |||||  |||||||||
Sbjct: 416 caatgcg-agttttgaagttaaaa 394