Jatropha Genome Database

JcCA0308171.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0308171.30 - phase: 0 /pseudo/partial
         (585 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11917                                                            236   5e-62

>KJC_c11917 
          Length = 863

 Score =  236 bits (119), Expect = 5e-62
 Identities = 355/432 (82%), Gaps = 10/432 (2%)
 Strand = Plus / Plus

                                                                       
Query: 103 gaggatgataatgaagttgaagttgataatgagaaagatgacagtcatgcaaaatcagtg 162
           |||| |||||||||||||||||  ||||| |||||||| ||| |||  |  ||| |||||
Sbjct: 32  gagggtgataatgaagttgaaggcgataaggagaaagacgacggtcgggttaaaccagtg 91

                                                                       
Query: 163 aagacgaacagagatgaggatgacaaaa-tgaggacaacggctgcaaatgttgctgctcg 221
           ||| | ||||  || ||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct: 92  aaggcaaacaaggaagaggatgacaaaaatgaggacaacagctgcaaatgttgctgcccg 151

                                                                       
Query: 222 agctgctgttggtggcgacgacatgctttcaaagtggcaactcatggcagagcaagcgcg 281
           ||||||||||||||| || |||||| | ||||| |||||||||||||| |||||||| ||
Sbjct: 152 agctgctgttggtggagatgacatgatgtcaaaatggcaactcatggctgagcaagcccg 211

                                                                       
Query: 282 ccagagacgggaaggtggaaatgaggcaacttccagttcccagtcagctaaagacgttgg 341
            |||| ||| ||||||  ||  |||||||| ||  || | |||||||| |||||   | |
Sbjct: 212 gcagaaacgtgaaggttcaacggaggcaacatctggtcctcagtcagcaaaaga---tag 268

                                                                       
Query: 342 ccacaaccctcggtcaacatctggaagaaatatgaaggataatcaagaaccagaaaagag 401
           || ||| |||| ||||||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 269 ccgcaagcctccgtcaacggctggaagaaatatgaaggacaatcaagaaccagaaaagag 328

                                                                       
Query: 402 gagctctgcagctgcatcaagggctgccaggaatttggggaagaaccaagtaat------ 455
            ||| ||||||||||||||||| |||  ||||| || |||| |||||||| |||      
Sbjct: 329 aagccctgcagctgcatcaaggcctgttaggaaatttgggaggaaccaaggaatcgtacc 388

                                                                       
Query: 456 gcaaattagtgtagcacgcaccatttctgtcaaggatgtaattgccgtgctagaaagaga 515
            |||| ||| || || ||||  ||||| || |||||||| ||||| | ||| ||||||||
Sbjct: 389 acaaaatagggtggctcgcagtatttcggtgaaggatgtgattgcagcgctggaaagaga 448

                       
Query: 516 accccagatgtc 527
           ||||||||||||
Sbjct: 449 accccagatgtc 460