Jatropha Genome Database

JcCA0306971.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0306971.20 + phase: 0 /partial
         (651 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04348                                                            722   0.0  

>KJC_c04348 
          Length = 571

 Score =  722 bits (364), Expect = 0.0
 Identities = 371/372 (99%), Gaps = 1/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 280 gataagctcatggcaacacattcagagttagctgaagaaggggcaattcaaattgtgata 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gataagctcatggcaacacattcagagttagctgaagaaggggcaattcaaattgtgata 60

                                                                       
Query: 340 ataaagacaacaggagataaaatattaagtcagccacttgcagacataggtgggaaagga 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61  ataaagacaacaggagataaaatattaagtcagccacttgcagacataggtgg-aaagga 119

                                                                       
Query: 400 ttgtttacaaaagagatagatgaggcactgataaatggtgaaattgacattgcagtccac 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ttgtttacaaaagagatagatgaggcactgataaatggtgaaattgacattgcagtccac 179

                                                                       
Query: 460 tcaatgaaagatgtccctacgtatttaccagagaagaccatcctcccctgcaatcttgag 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcaatgaaagatgtccctacgtatttaccagagaagaccatcctcccctgcaatcttgag 239

                                                                       
Query: 520 cgagaggatgttagagatgcatttatttccttgagcgcatcatcactggctgagcttcct 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cgagaggatgttagagatgcatttatttccttgagcgcatcatcactggctgagcttcct 299

                                                                       
Query: 580 gctgggagtgtcattggtacagcttccctcagaagaaagtcgcaaatactccacagatat 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gctgggagtgtcattggtacagcttccctcagaagaaagtcgcaaatactccacagatat 359

                       
Query: 640 gcatcactaagt 651
           ||||||||||||
Sbjct: 360 gcatcactaagt 371