Jatropha Genome Database
- JcCA0306791.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0306791.10 - phase: 0 /pseudo
(1806 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c07557 819 0.0
KJC_c03298 131 6e-30
KJC_c02600 100 2e-20
KJC_c00873 80 2e-14
KJC_c05927 76 3e-13
>KJC_c07557
Length = 553
Score = 819 bits (413), Expect = 0.0
Identities = 441/445 (99%), Gaps = 4/445 (0%)
Strand = Plus / Plus
Query: 1 atgatcacgttaacagatttttaccatgtaatgacggcaatggtgccgctatacgtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 atgatcacgttaacagatttttaccatgtaatgacggcaatggtgccgctatacgtggct 141
Query: 61 atgattttggcttatgggtctgtaaaatggtggaaaatctttactcctgatcaatgttca 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 142 atgattttggcttatgggtctgtaaaatggtggaaa-tctttactcctgatcaatgttca 200
Query: 121 ggaatcaatcgttttgttgctctttttgcagtccctcttctttcttttcactttatatct 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaatcaatcgttt-gttgctctttttgcagtccctcttctttcttttcactttatatct 259
Query: 181 tctaatgacccatattctatgaactttcgtttcatagctgctgatactctacaaaagatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctaatgacccatattctatgaactttcgtttcatagctgctgatactctacaaaagatc 319
Query: 241 atagttcttgtagtattagcgctttggactaagttaagcaaaaggggttgtttagaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atagttcttgtagtattagcgctttggactaagttaagcaaaaggggttgtttagaatgg 379
Query: 301 actattacactattttcactttctactcttccaaatactcttgttatgggtattcctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actattacactattttcactttctactcttccaaatactcttgttatgggtattcctttg 439
Query: 361 cttaaaggaatgtatggtgaattttctggtagtttgatggtgcaaattgttgttcttcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttaaaggaatgtatggtgaattttctggtagtttgatggtgcaaattgttgttcttcaa 499
Query: 421 -tgtattatttggta-tactttaat 443
|||||||||||||| |||||||||
Sbjct: 500 ttgtattatttggtattactttaat 524
>KJC_c03298
Length = 890
Score = 131 bits (66), Expect = 6e-30
Identities = 234/290 (80%)
Strand = Plus / Plus
Query: 1460 gatgcagggcttggcatggccatgttcagtcttggtctgttcatggctttgcaaccgagg 1519
|||||||| ||||| ||||| ||||| |||||||| | |||||||| || || || ||
Sbjct: 335 gatgcaggtcttggaatggctatgtttagtcttggattattcatggcattacagccaaga 394
Query: 1520 atcatagcatgtggaaattccattgcagcttttgctatggctgtgagattccttacaggt 1579
||||| || |||||||| || || || | ||||| |||||||| ||||||||||| |||
Sbjct: 395 atcattgcttgtggaaactcaatcgcgtcctttgcaatggctgttagattccttactggt 454
Query: 1580 ccagctgtaatggcagctgcttctattgctgttggccttagaggaacgctcttacacgtt 1639
|| || |||||||| |||||||| ||||| || ||||| | ||| || || || ||
Sbjct: 455 cctgcagtaatggctgctgcttcaattgcggtaggcctacgcggagttctgttgcatgta 514
Query: 1640 gcaattgtccaggcagctttaccacaaggaattgtcccctttgtctttgccaaggaatat 1699
||||| || ||||||||| | |||||||||||||| |||||||||||||| |||||||||
Sbjct: 515 gcaatagtgcaggcagctcttccacaaggaattgttccctttgtctttgcaaaggaatat 574
Query: 1700 aacgtgcaccctgatattcttagcacaggtgttatatttgggatgctaat 1749
|| || || || ||||| | ||||| || ||||||||||| ||| ||||
Sbjct: 575 aatgttcatccagatatattgagcactggagttatatttggaatgttaat 624
>KJC_c02600
Length = 920
Score = 99.6 bits (50), Expect = 2e-20
Identities = 257/326 (78%)
Strand = Plus / Plus
Query: 1454 ctgtcagatgcagggcttggcatggccatgttcagtcttggtctgttcatggctttgcaa 1513
||||| ||||| || ||||| ||||| |||||||| | |||||||| ||||| || |||
Sbjct: 61 ctgtctgatgctggtcttggaatggctatgttcagcttaggtctgtttatggcgttacaa 120
Query: 1514 ccgaggatcatagcatgtggaaattccattgcagcttttgctatggctgtgagattcctt 1573
|| | ||| || || ||||| ||||| | || || ||||| ||||| || ||||| |
Sbjct: 121 ccaaagataattgcttgtgggaattctgtcgctgcatttgccatggcagtccgattcttg 180
Query: 1574 acaggtccagctgtaatggcagctgcttctattgctgttggccttagaggaacgctctta 1633
|| ||||| || || ||||| || |||||||||||||||||||| | || || ||| |
Sbjct: 181 actggtcctgcagtgatggctgcagcttctattgctgttggcctgcgtggtaccctcctc 240
Query: 1634 cacgttgcaattgtccaggcagctttaccacaaggaattgtcccctttgtctttgccaag 1693
|| || || ||||| ||||| || ||||||||||||||||| || ||||| ||||||||
Sbjct: 241 catgtcgctattgttcaggctgcattaccacaaggaattgttccatttgtgtttgccaaa 300
Query: 1694 gaatataacgtgcaccctgatattcttagcacaggtgttatatttgggatgctaattgca 1753
|| || ||||| || || | ||||||||||| | || || || || |||||||| |||
Sbjct: 301 gagtacaacgtccatcccgccattcttagcactgcggtgattttcggaatgctaatagca 360
Query: 1754 ttgcccataactcttgtgtactacat 1779
||||| || |||||||| ||||||||
Sbjct: 361 ttgccgattactcttgtctactacat 386
>KJC_c00873
Length = 801
Score = 79.8 bits (40), Expect = 2e-14
Identities = 214/272 (78%)
Strand = Plus / Plus
Query: 1454 ctgtcagatgcagggcttggcatggccatgttcagtcttggtctgttcatggctttgcaa 1513
||||| ||||| || ||||| ||||| |||||||| | |||||||| ||||| || |||
Sbjct: 438 ctgtctgatgctggtcttggaatggctatgttcagcttaggtctgtttatggcgttacaa 497
Query: 1514 ccgaggatcatagcatgtggaaattccattgcagcttttgctatggctgtgagattcctt 1573
|| | ||| || || ||||| ||||| | || || ||||| ||||| || ||||| |
Sbjct: 498 ccaaagataattgcttgtgggaattctgtcgctgcatttgccatggcagtccgattcttg 557
Query: 1574 acaggtccagctgtaatggcagctgcttctattgctgttggccttagaggaacgctctta 1633
|| ||||| || || ||||| || |||||||||||||||||||| | || || ||| |
Sbjct: 558 actggtcctgcagtgatggctgcagcttctattgctgttggcctgcgtggtaccctcctc 617
Query: 1634 cacgttgcaattgtccaggcagctttaccacaaggaattgtcccctttgtctttgccaag 1693
|| || || ||||| ||||| || ||||||||||||||||| || ||||| ||||||||
Sbjct: 618 catgtcgctattgttcaggctgcattaccacaaggaattgttccatttgtgtttgccaaa 677
Query: 1694 gaatataacgtgcaccctgatattcttagcac 1725
|| || ||||| || || | |||||||||||
Sbjct: 678 gagtacaacgtccatcccgccattcttagcac 709
>KJC_c05927
Length = 525
Score = 75.8 bits (38), Expect = 3e-13
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 688 agaccatcaaatctaaccaatgcggagatttactctttacaatcatccagaaacccaaca 747
|||||||| |||||||| ||||| ||||| |||||| | ||||| || |||| || |||
Sbjct: 278 agaccatctaatctaactaatgcagagatatactctcttcaatcttcaagaatcc-aacc 220
Query: 748 ccaagaggctctagttttaatcacactgatttttactcaatg 789
||||||||||| |||||||| || ||||||||||| ||||||
Sbjct: 219 ccaagaggctcaagttttaaccatactgatttttattcaatg 178