Jatropha Genome Database
- JcCA0306761.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0306761.10 - phase: 2 /TE/partial
(1124 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02382 1433 0.0
KJC_c06125 668 0.0
KJC_c12534 464 e-130
KJC_c05759 62 3e-09
>KJC_c02382
Length = 1046
Score = 1433 bits (723), Expect = 0.0
Identities = 737/744 (99%)
Strand = Plus / Plus
Query: 17 ccttcccctacatcttttgacgaggtattccagtgcatgtttgactacatcgatagactg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccttcccctacatcttttgacgaggtattccagtgcatgtttgactacatcgatagactg 362
Query: 77 tttgttatggtgagacctagaaagttgctatacatggcaattgatggtgttgctcctcgt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttgttatggtgagacctagaaagttgctatacatggcaattgatggtgttgctcctcgt 422
Query: 137 gctaaaatgaatcagcaacgatctaggcgttttagagcagctaaagatgcagcagatgcg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gctaaaatgaatcagcaacgatctaggcgttttagagcagctaaagatgcagcagatgcg 482
Query: 197 gcagctgaagaagagaggctaagacaagagtttgagagcgagggtagaaagctaccacct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcagctgaagaagagaggctaagacaagagtttgagagcgagggtagaaagctaccacct 542
Query: 257 aaggaggaatcacaaacttttgattccaatgttatcactcctggaactgagtttatggct 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaggaggaatcacaaacttttgattccaatgttatcactcctggaactgagtttatggct 602
Query: 317 gttctttcaattgctctgcagtactacattcatcttaggctaaattatgatcctggatgg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gttctttcaattgctctgcagtactacattcatcttaggctaaattatgatcctggatgg 662
Query: 377 nnnnnnntaaaggttatcctttctgatgcaaatgttcctggcgaaggggaacacaagatt 436
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaaaaaataaaggttatcctttctgatgcaaatgttcctggcgaaggggaacacaagatt 722
Query: 437 atgtcttatatccgtctccagagaaatcttcctggttacaatccaaatacacgccattgc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atgtcttatatccgtctccagagaaatcttcctggttacaatccaaatacacgccattgc 782
Query: 497 ctgtatggtctggacgcagatctgattatgttagccttagctacccacgaggttcatttt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctgtatggtctggacgcagatctgattatgttagccttagctacccacgaggttcatttt 842
Query: 557 tcaattcttcgagaggttgttttcacacctggacaacaggacaaatgcttcctgtgtggt 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tcaattcttcgagaggttgttttcacacctggacaacaggacaaatgcttcctgtgtggt 902
Query: 617 cagatgggtcatttggctgcaggctgtgaaggaaaggctaagaggaaggcaggggaattt 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 cagatgggtcatttggctgcaggctgtgaaggaaaggctaagaggaaggcaggggaattt 962
Query: 677 gatgagaaaggtggagaggctgttgcagtaaaaaagccataccagtttctcaatatttgg 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gatgagaaaggtggagaggctgttgcagtaaaaaagccataccagtttctcaatatttgg 1022
Query: 737 actcttagagagtatctggaattt 760
||||||||||||||||||||||||
Sbjct: 1023 actcttagagagtatctggaattt 1046
>KJC_c06125
Length = 493
Score = 668 bits (337), Expect = 0.0
Identities = 461/497 (92%), Gaps = 4/497 (0%)
Strand = Plus / Plus
Query: 603 gcttcctgtgtggtcagatgggtcatttggctgcaggctgtgaaggaaaggctaagagga 662
|||||||||| || || ||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 1 gcttcctgtgcggccaaatgggtcatttagcagcagcttgtgaaggaaaggctaagagga 60
Query: 663 aggcaggggaatttgatgagaaaggtggagaggctgttgcagtaaaaaagccataccagt 722
|||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 61 aggctggggaatttgatgagaaaggtcaagaggctgttgcagtcaaaaagccataccagt 120
Query: 723 ttctcaatatttggactcttagagagtatctggaatttgaaatgagaattcctaaccctc 782
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 121 ttctcaatatttggactcttagagagtatctggaatttgaactgagaattcctaaccctc 180
Query: 783 catttgatatcgattttgaacgggttgtggatgattttatattcatgtgtttctttgttg 842
||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 181 catttgaggtcgattttgaacgcgttgtggatgattttattttcatgtgtttctttgttg 240
Query: 843 gcaatgattttttgccacatatgcccactttggagattcgcgagggtgcaatcaacttgc 902
||||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 241 gcaatgattttttgccacatatgcctacattggagattcgtgagggtgccatcaacttgc 300
Query: 903 taattgcagtatacaagaaggagtttagtacaatgggtgggtatctgacagatgcaagca 962
|||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 taatggcggtatacaagaaggagtttagtacaatgggt-ggtatctgacagatgcaagca 359
Query: 963 agccaaatttgagcaatgtcgagcattttattcaagcagtgggatcctatgaagataaaa 1022
||||||||||||| ||||| ||||||||||||||||||||||| ||||| || || |||
Sbjct: 360 agccaaatttgagtaatgtagagcattttattcaagcagtggggtccta-gagga-caaa 417
Query: 1023 tattccagaaaagagcacgcttgcaccagcggcagtcagaaagaatcaagcgggaaaagg 1082
|||||||| |||||||||| ||||||||||||||| |||||||||||||||| ||||| |
Sbjct: 418 tattccag-aaagagcacgattgcaccagcggcaggcagaaagaatcaagcgagaaaaag 476
Query: 1083 cacaggccagaagggga 1099
| |||||||||||||||
Sbjct: 477 cgcaggccagaagggga 493
>KJC_c12534
Length = 259
Score = 464 bits (234), Expect = e-130
Identities = 258/262 (98%), Gaps = 3/262 (1%)
Strand = Plus / Minus
Query: 784 atttgatatcgattttgaacgggttgtggatgattttatattcatgtgtttctttgttgg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atttgatatcgattttgaacgggttgtggatgattttatattcatgtgtttctttgttgg 200
Query: 844 caatgattttttgccacatatgcccactttggagattcgcgagggtgcaatcaacttgct 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 caatgattttttgccacatatgcccactttggagattcgcgagggtgcaatcaacttgct 140
Query: 904 aattgcagtatacaagaaggagtttagtacaatgggtgggtatctgacagatgcaagcaa 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aattgcagtatacaagaaggagtttagtacaatgggtgggtatctgacagatgcaagcaa 80
Query: 964 gccaaatttgagcaatgtcgagcattttattcaagcagtgggatcctatgaagataaaat 1023
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 79 gccaaatttgagcaatgtcgagcatttta-tcaagcagt-ggatcctatgaagataaaat 22
Query: 1024 attccagaaaagagcacgcttg 1045
|||||| ||||||||||||||
Sbjct: 21 gttccag-aaagagcacgcttg 1
>KJC_c05759
Length = 695
Score = 61.9 bits (31), Expect = 3e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 779 cctccatttgatatcgattttgaacgggttgtggatgattttatattcatgtgtttcttt 838
||||||||||| || | ||||||||| | |||||||| ||| | || ||||||||||||
Sbjct: 202 cctccatttgagataaactttgaacggatagtggatgactttgtgtttatgtgtttcttt 261
Query: 839 gttggcaatga 849
|||||||||||
Sbjct: 262 gttggcaatga 272