Jatropha Genome Database
- JcCA0306681.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0306681.20 - phase: 2 /pseudo/partial
(271 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01313 498 e-141
KJC_c10034 145 6e-35
KJC_c06503 123 2e-28
>KJC_c01313
Length = 961
Score = 498 bits (251), Expect = e-141
Identities = 265/267 (99%), Gaps = 2/267 (0%)
Strand = Plus / Minus
Query: 5 aggtgttttgcccaagtatttcagctcagagtggtcagtggctcagttccgattggttga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggtgttttgcccaagtatttcagctcagagtggtcagtggctcagttccgattggttga 324
Query: 65 gggttctcattacattgttgcttttggtcaccaaaagaatacagttgtgattcttggctt 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 gggttctcattacattgttgcttttggtcaccaaaaga-tacagttgtgattcttggctt 265
Query: 125 ggatggaagcttctaccgatgtcagttcgacccagtgaatggtggagagatgactcaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggatggaagcttctaccgatgtcagttcgacccagtgaatggtggagagatgactcaact 205
Query: 185 ggaatatcacaacttcttgaagccagaagctgcattctgaaaggacgttcatattataaa 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaatatcacaacttcttgaagccagaagctgcattctgaaagg-cgttcatattataaa 146
Query: 245 tttcttggggatacgtgcatatatata 271
|||||||||||||||||||||||||||
Sbjct: 145 tttcttggggatacgtgcatatatata 119
>KJC_c10034
Length = 463
Score = 145 bits (73), Expect = 6e-35
Identities = 170/201 (84%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 5 aggtgttttgcccaagtatttcagctcagagtggtcagtggctcagttccgattggttga 64
|||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 5 aggtgtattgccgaag-atttcagctcagagtggtcagtggctcagtttcgattaactga 63
Query: 65 gggttctcattacattgttgcttttggtcaccaaaagaatacagttgtgattcttggctt 124
|| | || || ||||||| ||||| ||||| ||||| ||| |||| ||| ||||| |
Sbjct: 64 aggattgcagtatcttgttgcgtttggccaccagaagaacacaattgtaattattggcat 123
Query: 125 ggatggaagcttctaccgatgtcagttcgacccagtgaatggtggagagatgactcaact 184
|||||||||||||||||||||| |||| ||||||| || ||||||||||||||||| ||
Sbjct: 124 ggatggaagcttctaccgatgtgagtttgacccagaaaacggtggagagatgactcagct 183
Query: 185 ggaatatcacaacttcttgaa 205
||| ||||||| ||||||||
Sbjct: 184 cgaacatcacaatttcttgaa 204
>KJC_c06503
Length = 531
Score = 123 bits (62), Expect = 2e-28
Identities = 171/208 (82%), Gaps = 7/208 (3%)
Strand = Plus / Minus
Query: 5 aggtgttttgcccaagtatttcagctcagagtggtcagtggctcagttccgattggttga 64
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 326 aggtgtattgccgaagtatttcagctcagagtggtcagtggctcagtttcgattaactga 267
Query: 65 gggttctcattacattgttgcttttggtcaccaaaagaatacagttgtgattcttggctt 124
|| | || || ||||||| ||||| ||||| ||||| ||| |||| ||| ||||| |
Sbjct: 266 aggattgcagtatcttgttgcgtttggccaccagaagaacacaattgtaattattggcat 207
Query: 125 ggatgga-------agcttctaccgatgtcagttcgacccagtgaatggtggagagatga 177
||||||| ||||||||||||||| |||| ||||||| || |||||||||||||
Sbjct: 206 ggatggaagtttgcagcttctaccgatgtgagtttgacccagaaaacggtggagagatga 147
Query: 178 ctcaactggaatatcacaacttcttgaa 205
|||| || ||| ||||||| ||||||||
Sbjct: 146 ctcagctcgaacatcacaatttcttgaa 119