Jatropha Genome Database

JcCA0306451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0306451.10 + phase: 0 /pseudo/partial
         (3546 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07541                                                            862   0.0  
KJC_c09123                                                             58   2e-07

>KJC_c07541 
          Length = 458

 Score =  862 bits (435), Expect = 0.0
 Identities = 454/458 (99%), Gaps = 3/458 (0%)
 Strand = Plus / Minus

                                                                       
Query: 493 tcgggaatgaatccctatcca-gagccttatcagagtatgtaccaaaagagacgcttagg 551
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tcgggaatgaatccctatccacgagccttatcagagtatgtaccaaaagagacgcttagg 399

                                                                       
Query: 552 agctctgaatatggagtggaagccaccttctataaaactcactgtggtgcctgacttcag 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agctctgaatatggagtggaagccaccttctataaaactcactgtggtgcctgacttcag 339

                                                                       
Query: 612 cttagacccagatttccaaatgttgccgttggcagacttggatgttctggttgagccact 671
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cttagacccagatttccaaatgttgccgttggcagacttggatgttctggttgagccact 279

                                                                       
Query: 672 gcctgagtttgtagatgcaatggattgggagccagaaaatgaagtgcaaagcgaagattc 731
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcctgagtttgtagatgcaatggattgggagccagaaaatgaagtgcaaagcgaagattc 219

                                                                       
Query: 732 agattcagagtacaatgtccctgaagagtattctactggaggtgagcaagggagtttgaa 791
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agattcagagtacaatgtccctgaagagtattctactggaggtgagcaagggagtttgaa 159

                                                                       
Query: 792 ttctagctcctctgttgatcgggagtgcagtgcagaagacagtgaagttgagggcaggaa 851
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttctagctcctctgttgatcgggagtgcagtgcagaagacagtgaagttgagggcaggaa 99

                                                                       
Query: 852 tggttttcatagatctaaaa--ggaaaaaatcaaaggctgaaattgagataatgacttct 909
           ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||
Sbjct: 98  tggttttcatagatctaaaaaggaaaaaaatcaaaggctgaaattgagataatgacttct 39

                                                 
Query: 910 tcaggaaggcgtgttaagaggaggaatttggacgaatg 947
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  tcaggaaggcgtgttaagaggaggaatttggacgaatg 1


>KJC_c09123 
          Length = 504

 Score = 58.0 bits (29), Expect = 2e-07
 Identities = 60/69 (86%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                       
Query: 337 aacacaggccaaggtgaatcccaacaagatgctaaatatgaccagttcttccttggtgat 396
           |||||||||||||| || |||||| | ||||| |||||| | |||||||||| ||| |||
Sbjct: 362 aacacaggccaaggcgagtcccaaaaggatgcaaaatataatcagttcttcc-tggggat 304

                    
Query: 397 tatcggccc 405
           |||||||||
Sbjct: 303 tatcggccc 295