Jatropha Genome Database
- JcCA0305711.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0305711.10 + phase: 0
(732 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c06155 599 e-171
KJC_s17066 311 1e-84
KJC_c01103 54 5e-07
>KJC_c06155
Length = 532
Score = 599 bits (302), Expect = e-171
Identities = 319/322 (99%), Gaps = 2/322 (0%)
Strand = Plus / Minus
Query: 1 atggctcttgaagcgctgaattcacccaccacagccactcctttcaattatgaggatact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atggctcttgaagcgctgaattcacccaccacagccactcctttcaattatgaggatact 300
Query: 61 tggaccaaaagaaaacgctccaagaggcctcgtggtgaatctcctcctaccgaagaggag 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tggaccaaaagaaa-cgctccaagaggcctcgtggtgaatctcctcctaccgaagaggag 241
Query: 121 tatctcgctctttgccttattatgcttgctcgcggtggctccaccagtcccacagctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tatctcgctctttgccttattatgcttgctcgcggtggctccaccagtcccacagctgaa 181
Query: 181 gaaatcgcatctacatctccaccgccaccgcaaccgccagctttgaatctctcttacaag 240
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gaa-tcgcatccacatctccaccgccaccgcaaccgccagctttgaatctctcttacaag 122
Query: 241 tgtactgtttgcaacaaagctttcccttcttatcaagctcttggtggacacaaagccagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtactgtttgcaacaaagctttcccttcttatcaagctcttggtggacacaaagccagc 62
Query: 301 cataaaaaatcctcctctgatt 322
||||||||||||||||||||||
Sbjct: 61 cataaaaaatcctcctctgatt 40
>KJC_s17066
Length = 468
Score = 311 bits (157), Expect = 1e-84
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 32 cagccactcctttcaattatgaggatacttggaccaaaagaaaacgctccaagaggcctc 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 cagccactcctttcaattatgaggatacttggaccaaaagaaaacgctccaagaggcctc 98
Query: 92 gtggtgaatctcctcctaccgaagaggagtatctcgctctttgccttattatgcttgctc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gtggtgaatctcctcctaccgaagaggagtatctcgctctttgccttattatgcttgctc 38
Query: 152 gcggtggctccaccagtcccacagctgaagaaatcgc 188
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 gcggtggctccaccagtcccacagctgaagaaatcgc 1
>KJC_c01103
Length = 923
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 118 gagtatctcgctctttgccttattatgcttgctcg 152
|||||||| |||||||||||| |||||||||||||
Sbjct: 813 gagtatctagctctttgccttgttatgcttgctcg 779