Jatropha Genome Database
- JcCA0304601.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0304601.20 + phase: 0 /partial
(582 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00773 1126 0.0
KJC_s19213 214 2e-55
KJC_s20684 159 9e-39
KJC_s19315 137 3e-32
KJC_c00670 66 1e-10
>KJC_c00773
Length = 1304
Score = 1126 bits (568), Expect = 0.0
Identities = 582/584 (99%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 1 atggctagcgcaagtgaagaaatagtgagcaacaaacaggttatattcaaagactacgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 atggctagcgcaagtgaagaaatagtgagcaacaaacaggttatattcaaagactacgcc 1052
Query: 61 aatggttaccctaaagaatcagacatgtttttgagtactaaaacgatcaaacttgaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 aatggttaccctaaagaatcagacatgtttttgagtactaaaacgatcaaacttgaagtg 992
Query: 121 ccagaaggaactaatggtgttcttgtcaagaatctgtatttgtcttgtgatccatctatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ccagaaggaactaatggtgttcttgtcaagaatctgtatttgtcttgtgatccatctatg 932
Query: 181 ggaatgcgaatgcgaaccaaagtggaaggatttgttatggagcctttcaagcctggttcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ggaatgcgaatgcgaaccaaagtggaaggatttgttatggagcctttcaagcctggttcg 872
Query: 241 gttgtagaaggtctaggagtggctaaagttgtagaatctaggcatccagacttcaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gttgtagaaggtctaggagtggctaaagttgtagaatctaggcatccagacttcaagaaa 812
Query: 301 ggtgacttggtttggggattgactacttgggaagagtatagtctcattcaaatgccattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ggtgacttggtttggggattgactacttgggaagagtatagtctcattcaaatgccattt 752
Query: 361 ctctttaaaattcaacacacagatgtgcctctttcccactacactggaattcttggtatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctctttaaaattcaacacacagatgtgcctctttcccactacactggaattcttggtatg 692
Query: 421 tctgggttaacagcttatgctggtttttatgaggttggtgctcctaagaaaggagattat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tctgggttaacagcttatgctggtttttatgaggttggtgctcctaagaaaggagattat 632
Query: 481 gtgttcgtttcagcagcttctggtgcagttggtcagcttgttggccaattcgcaaagttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtgttcgtttcagcagcttctggtgcagttggtcagcttgttggccaattcgcaaagttg 572
Query: 541 tcaggttgttatgtgg-tggaagtgc-ggaagcaaagaaaaagt 582
|||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 571 tcaggttgttatgtggttggaagtgctggaagcaaagaaaaagt 528
>KJC_s19213
Length = 203
Score = 214 bits (108), Expect = 2e-55
Identities = 135/140 (96%), Gaps = 3/140 (2%)
Strand = Plus / Plus
Query: 1 atggctagcgcaagtgaagaaatagtgagcaacaaacaggttatattcaaagactacgcc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 atggctagcgcaagtgaagaaatagtgagcaacaaacaggttatattc-aagactacgcc 119
Query: 61 aatggttaccctaaagaatcagacatgtttttgagt-actaaaacgat-caaacttgaag 118
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 120 aatggttaccctaaagaatcagacattgttttgagtaactaaaacgatacaaacttgaag 179
Query: 119 tgccagaaggaactaatggt 138
||||||||||||||||||||
Sbjct: 180 tgccagaaggaactaatggt 199
>KJC_s20684
Length = 415
Score = 159 bits (80), Expect = 9e-39
Identities = 94/96 (97%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 489 ttcagcagcttctggtgcagttggtcagcttgttggccaattcgcaaagttgtcaggttg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ttcagcagcttctggtgcagttggtcagcttgttggccaattcgcaaagttgtcaggttg 47
Query: 549 ttatgtgg-tggaagtgc-ggaagcaaagaaaaagt 582
|||||||| ||||||||| |||||||||||||||||
Sbjct: 46 ttatgtggttggaagtgctggaagcaaagaaaaagt 11
>KJC_s19315
Length = 535
Score = 137 bits (69), Expect = 3e-32
Identities = 97/101 (96%), Gaps = 4/101 (3%)
Strand = Plus / Minus
Query: 485 tcgtttcagcagcttctggtgcagttggtcagcttgttggccaatt-cgcaaagttgtca 543
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 528 tcgtttcagcagcttctggtgcagttggtcagcttgttggccaattacgcaaagttgtca 469
Query: 544 ggttgttatgtgg-tggaagtgc-ggaagcaaagaaaaagt 582
||||||||||||| ||||||||| |||||| ||||||||||
Sbjct: 468 ggttgttatgtggttggaagtgctggaagc-aagaaaaagt 429
>KJC_c00670
Length = 703
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 488 tttcagcagcttctggtgcagttggtcagcttgttggccaattcgcaaagttg 540
|||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 210 tttcagcagcgtcgggtgcagttggtcagcttgttgggcagtttgcaaagttg 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 289 gacttcaagaaaggtgacttggtttggggattgactacttgggaagagtatagtct 344
||||||||||||||||||||| | |||||| | | | ||||||||||||||||||
Sbjct: 412 gacttcaagaaaggtgacttgttatggggagttataagttgggaagagtatagtct 357
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 116 aagtgccagaaggaactaatggtgttcttgtcaagaatctgtatttgtcttgtgatcc 173
|||| |||||||||| ||| | |||| | ||||||||||| || ||||||||||||||
Sbjct: 588 aagtaccagaaggaagtaaagctgttttggtcaagaatctctacttgtcttgtgatcc 531