Jatropha Genome Database

JcCA0304141.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0304141.30 - phase: 0 /partial
         (885 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05895                                                            975   0.0  

>KJC_c05895 
          Length = 1049

 Score =  975 bits (492), Expect = 0.0
 Identities = 513/516 (99%), Gaps = 3/516 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggttcacactcaagcaaaggttatagcagaccaagaagtgatgtataaatatatatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtggttcacactcaagcaaaggttatagcagaccaagaagtgatgtataaatatatatca 504

                                                                       
Query: 61  agaaatttactttttgtggtgactgttgcaccaaaggctgcaggtggaattggatcagcg 120
            |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 -gaaatt-actttt-gtggtgactgttgcaccaaaggctgcaggtggaattggatcagcg 447

                                                                       
Query: 121 actccagacgaatcatggttggttgcatatcttattgatactataactggtcgcattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actccagacgaatcatggttggttgcatatcttattgatactataactggtcgcattttg 387

                                                                       
Query: 181 catcgcatgactcatcatggctcacatggtcctgtccgtgcggtttttagtgaaaactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catcgcatgactcatcatggctcacatggtcctgtccgtgcggtttttagtgaaaactgg 327

                                                                       
Query: 241 gttgtctatcactactttaatcttaaagcacacagatatgagatgtcagtcattgaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttgtctatcactactttaatcttaaagcacacagatatgagatgtcagtcattgaaatt 267

                                                                       
Query: 301 tatgatcaatctcgagcagacaacaaggatgttctgaagcttgttcttggaaaacataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatgatcaatctcgagcagacaacaaggatgttctgaagcttgttcttggaaaacataat 207

                                                                       
Query: 361 ctcactgctcctgtttcttcctattctcggccagaggtcacaacaaagtcacaatcctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctcactgctcctgtttcttcctattctcggccagaggtcacaacaaagtcacaatcctac 147

                                                                       
Query: 421 tattttacccattccgtcaaagcaatagctgttacatttactgccaagggcataacttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tattttacccattccgtcaaagcaatagctgttacatttactgccaagggcataacttca 87

                                               
Query: 481 aagcagttgcttatcggtacaattggtgaccaggtt 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 86  aagcagttgcttatcggtacaattggtgaccaggtt 51